L1P4e_5end
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000325 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Species | Haplorrhini |
| Length | 1391 |
| Kimura value | 17.78 |
| Tau index | 1.0000 |
| Description | 5' end of L1 retrotransposon, L1P4e_5end subfamily |
| Comment | - |
| Sequence |
GAGCCAAGATGGCCGACTAGACGCAGCCAGGAAGAGCTTCTCCCACCGAGAGAGACCAGACCATCAAGNAGACCGGCACACTCCGAGCAGATCTTCGGAAAGAAGGCATTGAGAGTGGACGGAGGGAGGACGCAGACCCCGGGCTGAAGGGGGAGGAAGCTGGGAACCCTGCACGGGGTTGCCGAGCACCAGGACTCGTTCCTGGCCCCGAGCGGCTCCTGGGGAAGGGGTGAGTNAAATAGGCGTGGAGTGGCCCACTCTCGCCACGGACCTCCGGAATCCTAGCTGCAGGAGACCCCACGACCCCCACGGACATTTGAGCTGGCAGGGAGAACTGCCCGGAGAGTTGGCAGAGACAGGACTCCAGCCTGCGCGGAGCCCAGAGGGTTTGGCGCGGGAACGGCTGCAGTGGAGCACGGCCANGGGCGCCCATCCCCCAAGGCTCGCCATACTCCTCTAGGTGGCTTTGGCCTTTGTTGGCTGCCGGACCTGGACAGAGCAGGGCTGTCTTGCCCGTGGGACTGGGGCCAGTCTGATCTGAGCGCCCCCCTGTCTGCCGGCCTCTCCCAGGGTCCCTGCCTGGCCGCACCCGCTTGCAGCGCAGCCTCAGNTGCCCAGCCGGGGCGCTTNCCAGCGGCCACCGCCATAGCTCTTTCGCCGGCAGACCCTCGCCNNCCCGTCGGAGNGCTTTTGCCGGTGCCCACGCACCCACCGCCGCCCTGCCGGCGCGCACTCGCCCGCAGCCTCCCCGCCGCCCTGCGGTGCGCATTGCCCACGGCCCCCACTGCCCCGCTGGCGCAATGCNTNCACACGGCGNCCCCCGCCGCCCCGCCGGAGCGCTTTTGCCGGCANCCCCCATCGGAGTGTTGTTGCCAGCGGACTGGGAACACNCTCGGCCCCTCCAGCGCAGCAGGTGCTTAACCTCGAGGGGCCAGAGAACAAAGCCGCGGGCCTGGTCCCAGCCCCCCAGGGTTAGAGCACGCAGCCCAGGAGTGCTGAGCTGAGCCTTGGCCCCCTGAAANCATCCAGAAACGAAGCCAGTCGACTAAACCCAACTTATACCACAGTCAAACCCTCAAGGGCATCAAAGAATATAAAAGCAAAAAGCCCCATCCAAAGGACAGCAACTTCAAAGATTAAAGGAACATCAGCCCACACAGATGAGAAAGAACCAGCGCAAGAACTCTGGCAACTCTAAAAGCCAGAGTGTCTTCTTACCTCCAAACGACCGCACTAGCTCCCCAGCAATGGTTCTTAACCAGACTGAAATGGCTGAAATGACAGACATAGAATTCAGAATCTGGATGGCAANGAAGNTCATCGAGATNCAGGAGAAGGTTGAAACCCAATCCAAGGAAANCAGTAAAACGATNCAAGAGCTGAAAGATGAC
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1P4e_5end | ZAP1 | 1072 | 1086 | + | -0.38 | ACCCTCAAGGGCATC |
| L1P4e_5end | Rarb | 293 | 308 | - | -5.69 | GGGGGTCGTGGGGTCT |
| L1P4e_5end | E2F7 | 387 | 400 | - | -6.02 | TTCCCGCGCCAAAC |
| L1P4e_5end | GLIS1 | 291 | 305 | + | -10.22 | GGAGACCCCACGACC |
| L1P4e_5end | DAL81 | 940 | 958 | + | -26.01 | CAAAGCCGCGGGCCTGGTC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
