L1P4e_5end
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000325 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Species | Haplorrhini |
| Length | 1391 |
| Kimura value | 17.78 |
| Tau index | 1.0000 |
| Description | 5' end of L1 retrotransposon, L1P4e_5end subfamily |
| Comment | - |
| Sequence |
GAGCCAAGATGGCCGACTAGACGCAGCCAGGAAGAGCTTCTCCCACCGAGAGAGACCAGACCATCAAGNAGACCGGCACACTCCGAGCAGATCTTCGGAAAGAAGGCATTGAGAGTGGACGGAGGGAGGACGCAGACCCCGGGCTGAAGGGGGAGGAAGCTGGGAACCCTGCACGGGGTTGCCGAGCACCAGGACTCGTTCCTGGCCCCGAGCGGCTCCTGGGGAAGGGGTGAGTNAAATAGGCGTGGAGTGGCCCACTCTCGCCACGGACCTCCGGAATCCTAGCTGCAGGAGACCCCACGACCCCCACGGACATTTGAGCTGGCAGGGAGAACTGCCCGGAGAGTTGGCAGAGACAGGACTCCAGCCTGCGCGGAGCCCAGAGGGTTTGGCGCGGGAACGGCTGCAGTGGAGCACGGCCANGGGCGCCCATCCCCCAAGGCTCGCCATACTCCTCTAGGTGGCTTTGGCCTTTGTTGGCTGCCGGACCTGGACAGAGCAGGGCTGTCTTGCCCGTGGGACTGGGGCCAGTCTGATCTGAGCGCCCCCCTGTCTGCCGGCCTCTCCCAGGGTCCCTGCCTGGCCGCACCCGCTTGCAGCGCAGCCTCAGNTGCCCAGCCGGGGCGCTTNCCAGCGGCCACCGCCATAGCTCTTTCGCCGGCAGACCCTCGCCNNCCCGTCGGAGNGCTTTTGCCGGTGCCCACGCACCCACCGCCGCCCTGCCGGCGCGCACTCGCCCGCAGCCTCCCCGCCGCCCTGCGGTGCGCATTGCCCACGGCCCCCACTGCCCCGCTGGCGCAATGCNTNCACACGGCGNCCCCCGCCGCCCCGCCGGAGCGCTTTTGCCGGCANCCCCCATCGGAGTGTTGTTGCCAGCGGACTGGGAACACNCTCGGCCCCTCCAGCGCAGCAGGTGCTTAACCTCGAGGGGCCAGAGAACAAAGCCGCGGGCCTGGTCCCAGCCCCCCAGGGTTAGAGCACGCAGCCCAGGAGTGCTGAGCTGAGCCTTGGCCCCCTGAAANCATCCAGAAACGAAGCCAGTCGACTAAACCCAACTTATACCACAGTCAAACCCTCAAGGGCATCAAAGAATATAAAAGCAAAAAGCCCCATCCAAAGGACAGCAACTTCAAAGATTAAAGGAACATCAGCCCACACAGATGAGAAAGAACCAGCGCAAGAACTCTGGCAACTCTAAAAGCCAGAGTGTCTTCTTACCTCCAAACGACCGCACTAGCTCCCCAGCAATGGTTCTTAACCAGACTGAAATGGCTGAAATGACAGACATAGAATTCAGAATCTGGATGGCAANGAAGNTCATCGAGATNCAGGAGAAGGTTGAAACCCAATCCAAGGAAANCAGTAAAACGATNCAAGAGCTGAAAGATGAC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1P4e_5end | DREB2F | 635 | 645 | + | 15.52 | CGGCCACCGCC |
| L1P4e_5end | DOF3.6 | 1084 | 1104 | - | 15.45 | TTTGCTTTTATATTCTTTGAT |
| L1P4e_5end | ZNF213 | 574 | 585 | - | 15.44 | GGCCAGGCAGGG |
| L1P4e_5end | ENAP2 | 829 | 837 | - | 15.41 | CTCCGGCGG |
| L1P4e_5end | PK08602.1 | 638 | 645 | + | 15.41 | CCACCGCC |
| L1P4e_5end | PK08602.1 | 709 | 716 | + | 15.41 | CCACCGCC |
| L1P4e_5end | RAP2-11 | 709 | 719 | + | 15.38 | CCACCGCCGCC |
| L1P4e_5end | ERF115 | 709 | 719 | + | 15.34 | CCACCGCCGCC |
| L1P4e_5end | Zm00001d002364 | 710 | 719 | + | 15.29 | CACCGCCGCC |
| L1P4e_5end | DREB2G | 638 | 651 | - | 15.23 | AGCTATGGCGGTGG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
