L1P2_5end
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000317 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Species | Catarrhini |
| Length | 2275 |
| Kimura value | 5.44 |
| Tau index | 0.8359 |
| Description | 5' end of L1 retrotransposon, L1P2_5end subfamily |
| Comment | - |
| Sequence |
TCCGTTCCAAGATGGCCGAATAGGAACAGCTCCGGTCTGCAGCTCCCAGCGTGATCGACGCAGAAGACGGGTGATTTCTGCATTTCCAACTGAGGTACCTGGTTCATCTCACTGGGACTGGTTGGACAGTGGGTGCAGCCCACGGAGGGCGAGCCGAAGCAGGGCGGGGCATCGCCTCACCCGGGAAGCGCAAGGGGTCGGGGGATTTCCCTTTCCTAGCCAAGGGAAGCCGTGACAGACTGTACCTGGAAAANCGGGACACTCCCGCCCAAATACTGCGCTTTTCCAACGGTCTTAGCAAACGGCACACCAGGAGATTNTATCCCGCGCCTGGCTCGGCGGGTCCCACGCCCACGGAGCCTTGCTCACTGCTAGCGCAGCAGTCTGAGATCGANCTGCGAGGCGGCAGCCTGGCTGGGGGAGGGGCGTCCGCCATTGCTGAGGCTTGAGTAGGTAAACAAAGCGGCCGGGAAGCTCGAACTGGGCGGAGCCCACCGCAGCTCAGCGAGGCCTGCTGCCTCTGTAGACTCCACCTCTGGGGGCAGGGCATAGCTGAACAAAAGGCAGCAGACAACTTCTGCAGACTTAAACGTCCCTGTCTGACAGCTCTGAAGAGAGCAGTGGTTCTCCCAGCACGGCGTTTGAGCTCTGAGAACGGACAGACTGCCTCCTCAAGTGGGTCCCTGACCCCCGTGTAGCCTAACTGGGAGACACCTCCCAGTAGGGGCCGACNGACACCTCATACAGGCGGGTGCCCCTCTGGGACGAAGCTTCCAGAGGAAGGATCAGGCAGCAATATTTGCTGTTCTGCAATATTTGCTGTTCTGCAGCCTCCGCTGGTGATACCCAGGCAAACAGGGTCTGGAGTGGACCTCCAGCAAACTCCAACAGACCTGCAGCTGAGGGNCCTGACTGTTAGAAGGAAAACTAACAAACAGAAAGGAATAGCATCAACATCAACAAAAAGGACATCCACACCAAAACCCCATCTGTAGGTCACCANCATCAAAGACCAAAGGTAGATAAAACCACAAAGATGGGGAGAAACCAGAGCAGAAAAGCTGAAAATTCTAAAAACCAGAGCGCCTCTTCTCCTCCAAAGGATCGCAGCTCCTCGCCAGCAACGGAACAAAGCTGGACGGAGAATGACTTTGACGAGTTGACAGAAGTAGGCTTCAGAAGGTCGGTAATAACAAACTTCTCCGAGCTAAAGGAGGATGTTCGAACCCATCGCAAGGAAGCTAAAAACCTTGAAAAAAGATTAGACGAATGGCTAACTAGAATAAACAGTGTAGAGAAGACCTTAAATGACCTGATGGAGCTGAAAACCACGGCACGAGAACTNCGTGACGCATGCACAAGCTTCAGTAGCCGATTCGATCAAGTGGAAGAAAGGGTATCAGTGATTGAAGATCAAATTAATGAAATAAAGCGAGAAGANAAGNTTAGAGAAAAAAGAGTAAAAAGAAACGAACAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTTTGATTGGTGTACCTGAAAGTGACGGGGAGAATGGAACCAAGTTGGAAAACACTCTTCAGGATATTATCCAGGAGAACTTCCCCAACCTAGCAAGGCAGGCCAACATTCAAATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTCGAGAAGAGCAACCCCAAGACACATAATTGTCAGATTCACCAAGGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCACAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATCCTTTACAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCCTTACAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCACTGCAAAAACATGCCAAATTGTAAAGACCATCGATGCTAGGAAGAAACTGCATCAACTAACGGGCAAAATAACCAGCTAACATCATAATGACAGGATCAAATTCACACATAACAATATTAACCTTAAATGTAAATGGGCTAAATGCCCCAATTAAAAGACACAGACTGGCAAATTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAGACCCATCTCACGTGCAGAGAC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1P2_5end | TCP7 | 339 | 349 | - | 17.38 | GTGGGACCCGC |
| L1P2_5end | dl | 201 | 210 | + | 17.26 | GGGGATTTCC |
| L1P2_5end | Dif | 202 | 211 | - | 17.21 | GGGAAATCCC |
| L1P2_5end | Six3 | 1392 | 1402 | + | 17.00 | AAAGGGTATCA |
| L1P2_5end | TCP9 | 339 | 349 | + | 16.99 | GCGGGTCCCAC |
| L1P2_5end | RELA | 201 | 210 | + | 16.96 | GGGGATTTCC |
| L1P2_5end | CG3065 | 345 | 355 | + | 16.92 | CCCACGCCCAC |
| L1P2_5end | TCP22 | 339 | 349 | - | 16.89 | GTGGGACCCGC |
| L1P2_5end | SP9 | 346 | 355 | + | 16.80 | CCACGCCCAC |
| L1P2_5end | SP3 | 345 | 355 | + | 16.65 | CCCACGCCCAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
