L1MEg_5end
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000311 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Species | Theria_mammals |
| Length | 2101 |
| Kimura value | 29.58 |
| Tau index | 0.7568 |
| Description | 5' end of L1 retrotransposon, L1MEg_5end subfamily |
| Comment | - |
| Sequence |
TTCCGCTTCCGGCAATGGCGGACTAGNTTGTTCAGACCAACCCTCCCGCTGAGAACAACTAGAAAAGCTGGACAAAATATAAAAAACATCTGTTTGAAGGCATCGGAGAGCTACCAAGGCAGCGAGGAATTTGAGGGGCCAAGATCCCGGAGAGAAGGGAAGCCCAGAGAGGTGAGCCCGACATTCGGNGCCGCTTTTCCCCTCGAGGCATTTGCCGATTCCGAAAGCGGCGGCTGAGAGGCTGAGAAGCTGAGCAGAGCTTTCGGCAGTCTCACGGGGCTGGGGAGACAAAAATTGGAGTTCAGGGCCCGCCAAGGAGGAGGGGCCCTGGTAAACCCCAGCTTTCAGTTGGGACCCCGAAGGGCTACACCCTAGGAGTAAGGGCGAACCGGAAATAGACCAGCCCTCACAAAGACTGAAGCCCAGCTTCGAATCANCTCAATCCCTGATTGGATTAAGGTGATCTGATTGCTAGTGCCCCTAGCTGCCTGCCAGAAGCAAAAGTAAATCCTCTCTGGAGGAAGATAACATCATCCAGAGCCTCAAATTATCTCTACAATTTTTCATATACAATGTCCGGCATTCAATCAAAAATNACCAGGCATACNAGGAGACAAGACAAATGACCGAAAANCAAGAGAAAAACAGACAATAGAAACAGACCCACAGGNGATCCAGATATTGGAGTTATCAGACACGGACTTTAAAATAACTATGATTAATATGTTCAAGAAAATAAANGACAAGATGGAGAATTTCAGCAGAGAACTGGAANCTATAAAAAAGAATCAAATGGAAATTCTAGAACTGAAAAATATACAATAACTGAAATTAAGAACTCAATAGATGGGTTTAACAGCAGATTAGACACAGCNGAAGAGAGGATTAGTGAACTGGAAGATAGGTCAGNAGAAAATATCCAGACTGAAGCACAGAGAGANAAAAAAATGGAAAATACAGAAAAGAGCGTAAGAGACATATGGGACACGGTGAAAAGGTCTAACATACGTGTAATTGGAGTCCCAGAAGGAGAGGAGAGAGAGAATGGGGCAGAAGCAATATTTGAAGAGATAATGGCCGAGAATTTTCCAAAACTGATGAAAGACATCAANCCACAGATTCAAGAAGCTCTACGAACCCCAAGCAGGATAAATACAAAGAAAACCACACCTAGGCACATCATAGTAAAACTGCTGAAAACCAAAGACAAAGAGAAAATCTTAAAAGCAGCCAGAGAAAAAAGACACATTACCTTCAAAGGAGCAACAATAAGACTGACAGCTGACTTCTCAACAGAAACAATGGAAGCCAGAAGACAATGGAATGACATCTTTAAAGTGCTGAAAGAAAATAACTGCCAACCTAGAATTCTATACCCAGGAAAATATCCTTCAAAAATGAAGGCGAAATAAAGACATTTTCAGACAAACAAAAACTGAGAGAATTCGTCACCAGCAGACCTGCACTAAAAGAAATACTAAAGGAAGTTCTTCAGGCAGAAGGAAAATGATCCCAGATGGAAGCACGGAAATGCAGGAAGGAATGAAGAGCAACGGAAAGGGTAAATATGTGGGTAAATCTAAATGAATATTGACTGTATAAAACAATAATAATAATGTCTTGTGGGGTTTAAAATATATATAGAATTAAAATACATGACAACAATAGCACAAAAGGGAAGAGAGGGTAAATGGAGTTAAAGTGTTCTAAGGTCCTTGCATTGTCCGGGAAGTGGTAAAGTACTAATTTATATTAGACTTTAATAAGTCAAGGATGCATGTTGTAATCTCTAGGGTAACCACTAAAAGAATAGTAAAAGAATGTATAACTAACAAGCTAATAGAGAGGGAAAATGGAATAATAAAAATATTCGATTAATCCAAAAGAAGGCAAGAAAAAAGGAAAAAANAGAAAGAAAAACAGATGGGACAAATAGAAAACAAATAGTAAGATGGTAGATTTAAACCCAAATATATCAGTAATTACATTAAATGTAAATGGACTAAATACTCCAATTNAAAGANAAAGATTGTCAGACTGGATTTAAAAACAAAACCCAACTATATGCTGCTTACAAGAGACACACCTTAAATATAAGGAC
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1MEg_5end | BPC5 | 1415 | 1444 | + | -41.77 | ACATTTTCAGACAAACAAAAACTGAGAGAA |
| L1MEg_5end | BPC5 | 1026 | 1055 | + | -44.11 | GAAGGAGAGGAGAGAGAGAATGGGGCAGAA |
| L1MEg_5end | BPC5 | 1030 | 1059 | + | -44.12 | GAGAGGAGAGAGAGAATGGGGCAGAAGCAA |
| L1MEg_5end | BPC5 | 1032 | 1061 | + | -44.20 | GAGGAGAGAGAGAATGGGGCAGAAGCAATA |
| L1MEg_5end | BPC5 | 1395 | 1424 | + | -47.18 | AAAATGAAGGCGAAATAAAGACATTTTCAG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
