L1MEg_5end
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000311 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Species | Theria_mammals |
| Length | 2101 |
| Kimura value | 29.58 |
| Tau index | 0.7568 |
| Description | 5' end of L1 retrotransposon, L1MEg_5end subfamily |
| Comment | - |
| Sequence |
TTCCGCTTCCGGCAATGGCGGACTAGNTTGTTCAGACCAACCCTCCCGCTGAGAACAACTAGAAAAGCTGGACAAAATATAAAAAACATCTGTTTGAAGGCATCGGAGAGCTACCAAGGCAGCGAGGAATTTGAGGGGCCAAGATCCCGGAGAGAAGGGAAGCCCAGAGAGGTGAGCCCGACATTCGGNGCCGCTTTTCCCCTCGAGGCATTTGCCGATTCCGAAAGCGGCGGCTGAGAGGCTGAGAAGCTGAGCAGAGCTTTCGGCAGTCTCACGGGGCTGGGGAGACAAAAATTGGAGTTCAGGGCCCGCCAAGGAGGAGGGGCCCTGGTAAACCCCAGCTTTCAGTTGGGACCCCGAAGGGCTACACCCTAGGAGTAAGGGCGAACCGGAAATAGACCAGCCCTCACAAAGACTGAAGCCCAGCTTCGAATCANCTCAATCCCTGATTGGATTAAGGTGATCTGATTGCTAGTGCCCCTAGCTGCCTGCCAGAAGCAAAAGTAAATCCTCTCTGGAGGAAGATAACATCATCCAGAGCCTCAAATTATCTCTACAATTTTTCATATACAATGTCCGGCATTCAATCAAAAATNACCAGGCATACNAGGAGACAAGACAAATGACCGAAAANCAAGAGAAAAACAGACAATAGAAACAGACCCACAGGNGATCCAGATATTGGAGTTATCAGACACGGACTTTAAAATAACTATGATTAATATGTTCAAGAAAATAAANGACAAGATGGAGAATTTCAGCAGAGAACTGGAANCTATAAAAAAGAATCAAATGGAAATTCTAGAACTGAAAAATATACAATAACTGAAATTAAGAACTCAATAGATGGGTTTAACAGCAGATTAGACACAGCNGAAGAGAGGATTAGTGAACTGGAAGATAGGTCAGNAGAAAATATCCAGACTGAAGCACAGAGAGANAAAAAAATGGAAAATACAGAAAAGAGCGTAAGAGACATATGGGACACGGTGAAAAGGTCTAACATACGTGTAATTGGAGTCCCAGAAGGAGAGGAGAGAGAGAATGGGGCAGAAGCAATATTTGAAGAGATAATGGCCGAGAATTTTCCAAAACTGATGAAAGACATCAANCCACAGATTCAAGAAGCTCTACGAACCCCAAGCAGGATAAATACAAAGAAAACCACACCTAGGCACATCATAGTAAAACTGCTGAAAACCAAAGACAAAGAGAAAATCTTAAAAGCAGCCAGAGAAAAAAGACACATTACCTTCAAAGGAGCAACAATAAGACTGACAGCTGACTTCTCAACAGAAACAATGGAAGCCAGAAGACAATGGAATGACATCTTTAAAGTGCTGAAAGAAAATAACTGCCAACCTAGAATTCTATACCCAGGAAAATATCCTTCAAAAATGAAGGCGAAATAAAGACATTTTCAGACAAACAAAAACTGAGAGAATTCGTCACCAGCAGACCTGCACTAAAAGAAATACTAAAGGAAGTTCTTCAGGCAGAAGGAAAATGATCCCAGATGGAAGCACGGAAATGCAGGAAGGAATGAAGAGCAACGGAAAGGGTAAATATGTGGGTAAATCTAAATGAATATTGACTGTATAAAACAATAATAATAATGTCTTGTGGGGTTTAAAATATATATAGAATTAAAATACATGACAACAATAGCACAAAAGGGAAGAGAGGGTAAATGGAGTTAAAGTGTTCTAAGGTCCTTGCATTGTCCGGGAAGTGGTAAAGTACTAATTTATATTAGACTTTAATAAGTCAAGGATGCATGTTGTAATCTCTAGGGTAACCACTAAAAGAATAGTAAAAGAATGTATAACTAACAAGCTAATAGAGAGGGAAAATGGAATAATAAAAATATTCGATTAATCCAAAAGAAGGCAAGAAAAAAGGAAAAAANAGAAAGAAAAACAGATGGGACAAATAGAAAACAAATAGTAAGATGGTAGATTTAAACCCAAATATATCAGTAATTACATTAAATGTAAATGGACTAAATACTCCAATTNAAAGANAAAGATTGTCAGACTGGATTTAAAAACAAAACCCAACTATATGCTGCTTACAAGAGACACACCTTAAATATAAGGAC
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1MEg_5end | ZNF136 | 1357 | 1371 | - | 21.59 | GAATTCTAGGTTGGC |
| L1MEg_5end | ZNF354A | 1989 | 2008 | + | 21.34 | TAAATGTAAATGGACTAAAT |
| L1MEg_5end | ERF2 | 227 | 239 | - | 17.47 | TCTCAGCCGCCGC |
| L1MEg_5end | ERF095 | 227 | 239 | + | 17.36 | GCGGCGGCTGAGA |
| L1MEg_5end | DUX4 | 447 | 457 | - | 16.87 | TAATCCAATCA |
| L1MEg_5end | ERF091 | 227 | 239 | + | 16.74 | GCGGCGGCTGAGA |
| L1MEg_5end | ETV2 | 388 | 396 | + | 16.39 | ACCGGAAAT |
| L1MEg_5end | PATZ1 | 316 | 326 | + | 16.24 | GGAGGAGGGGC |
| L1MEg_5end | Mecom | 612 | 622 | + | 16.04 | AGACAAGACAA |
| L1MEg_5end | ERF104 | 227 | 242 | - | 16.03 | GCCTCTCAGCCGCCGC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
