L1M5_orf2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000008 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Species | Theria_mammals |
| Length | 3294 |
| Kimura value | 29.26 |
| Tau index | 0.8761 |
| Description | ORF2 from L1 retrotransposon, L1M5_orf2 subfamily |
| Comment | Present in eutherians. |
| Sequence |
ATGGTAGATTTAAACCCAANCATATCAATAATTACATTAAATGTAAATGGNCTAAACACTCCAATTAAAAGGCAGAGATTGTCAGACTGGATAAAAAAACAAGACCCAACTATATGCTGTCTACAAGAGACGCACTTTAAATATAAAGACACAGANAGGTTGAAAGTAAAAGGATGGAAAAAGATATACCATGCAAACACTAANCAAAAGAAAGCTGGNGTGGCTATATTAATATCAGACAAAGTAGACTTCAAGGCAAGAAATATTACCAGAGATAAAGAGGGACATTTCATAATGATAAAAGGGTCAATTCATCAAGAAGACATAACAATCCTAAATGTGTATGCACCTAATAACAGAGCTTCAAAATACATGAAGCAAAAACTGACAGAACTAAAAGGAGAAATAGACAAATCCACAATTATAGTNGGAGATTTTAACACNCCTCTCTCAGTAATTGATAGAACAAGTAGACAAAAAATCAGTAAGGATATAGAAGATTTGAACAACACTATCAACCAACTTGACCTAATTGACATTTATAGAACACTNCACCCAACAACNGCAGAATACACATTCTTTTCAAGTGCACATGGAACATTTACCAAGATAGACCATATNCTGGGCCATAAAACAAGTCTCAATAAATTTNAAAGGATTGAAATCATACAGAGTATGTTCTCTGACCACAATGGAATTAAATTAGAAATCAATAACAAAAAGATANCTAGAAAATCCCCAAATATTTGGAAATTAAACAACACACTTCTAAATAACCCATGGGTCAAAGAAGAAATCACAANGGAAATTAGAAAATATTTTGAACTGAATGANAATGAAAATACAACATATCAAAATTTGTGGGATGCAGCTAAAGCAGTGCTTAGAGGGAAATTTATAGCNTTAAATGCNTATATTAGAAAAGAAGAAAGGCTTAAAATCAATGATCTAAGCTTCCACCTTAAGAAGCTAGAAAAAGAAGAGCAAATTAAACCCAAAGNAAGTAGAAGGAAGGAAATAATAAAGATAAGAGCAGAAATCAATGAAATAGAAAACAAANANACAATAGAGAAAATCAACGAAGCCAAAAGCTGGTTCTTTGAAAAGATCAATAAAATTGATAAACCTCTAGCNAGACTGATCAAGAAAAAAAGAGAGAAGACACAAATTACCAATATCAGGAATGAAAAAGGAGACATCACTACAGATCCTACAGACATTAAAAGGATAATAAGAGAATATTATGAACAACTTTATGCCAATAAATTTGANAACTTAGATGAAATGGACAAATTCCTTGAAAAACACAANTTACCAAAACTGACNCAAGAAGAAATAGAAAATCTGAATAGCCCTATATCTATTAAAGAAATTGAATTTGTAATTAAAAACCTTCCCACAAAGAAAACTCCAGGCCCAGATGGCTTCACTGGTGAATTCTACCAAACATTTAAGGAAGAAATAATACCAATCTTACACAAACTCTTCCAGAAAATAGAAAAAGAGGGAACACTTCCCAACTCATTTTATGAGGCCAGCATNACCCTGATACCAAAACCNGACAAAGACATTACAAGAAAAGAAAATTACAGACCAATATCCCTCATGAACATAGATGCAAAAATCCTNAACAAAATATTAGCAAATCGAATCCAGCAATATATAAAAAGGATAATACATCATGACCAAGTGGGGTTTATCCCAGGAATGCAAGGTTGGTTTAACATTCGAAAATCAATCAATGTAATTCACCATATTAACAGAATAAAGGAGAAAAATCATATGATCATCTCAATAGATGCAGAAAAAGCATTTGACAAAATTCAACACCCATTCATGATAAAAACTCTCAGCAAACTAGGAATAGAAGGGAACTTCCTCAACCTGATAAAGGGCATCTACGAAAAACCTACAGCNAACATCATACTTAATGGTGAAANACTGAANGCTTTCCCCCTAAGATCGGGAACAAGACAAGGATGTCCGCTNTCACCACTTCTATTCAACATTGTACTGGAGGTCCTAGCCAGTGCAATAAGGCAAGAAAAAGAAATAAAAGGCATAAAGATTGGAAAGGAAGAAATAAAACTGTCNTTATTCGCAGATGACATGATTGTNTACGTAGAAAATCCNAAAGAATCTACAAANAAACTACTAGAACTAATAAGTGAATTTAGCAAGGTCGCNGGATACAAGGTCAATATACAAAAATCAATTGTATTTCTATATACTAGCAACAAACAATTGGAAAATGAAATTTNAAAAACAATACCATTTACAATAGCATCAAAAAACATNAAATACTTAGGAATAAATCTAACAAAANATGTGCAAGACCTNTACACTGAAAACTACAAAACATTGCTGAGAGAAATTAAAGAAGACCTAAATAAATGGAGAGATATACCATGTTCATGGATTGGAAGACTCAATATTGTNAAGATGTCAATTCTCCCCAAATTGATCTATAGATTCAATGCAATCCCAATCAAAATCCCAGCAGGTTTTTTTGTAGAAATTGACAAGCTGATTCTAAAATTTATATGGAAATGCAAAGGACCNAGAATAGCCAAAACAATCTTGAAAAAGAAGAACAAAGTTGGAGGACTTACACTACCNGATNTCAAGACTTATTATAAAGCTACAGTAATCAAGACAGTGTGGTATTGGCGTAAGGATAGACAAATAGATCAATGGAACAGAATAGAGAGTCCAGAAATAGACCCACACATATATGGNCANTTGATTTTTGACAAAGGTGCCAANGCAATTCAGTGGGGAAAGGATAGTCTTTTCAACAAATGGTGCTGGAACAATTGGATATCCATATGGAAAAAAATGAANCTCGACCCCTACCTCACACCATACACAAAAATTAATTCNAGATGGATCATAGACCTAAATGTAAAAGNTAAAACTATAAAACTTCTAGAAGAAAACATAGGAGAATATCTTCGTGACCTTGGGNTAGGCAAAGATTTCTTAAACAGGACACAAAAAGCACNAACCATAAAAGAAAAAATTGATAAATTGGACTNCATCAAAATTAAAAACTTCTGCTCNTCAAAAGACACCGTTAAGAAAATGAAAAGGCAAGCCACAGANTGGGAGAAAATATTTGCAANACATATATCTGACAAAGGACTCGTATCCAGAATATATAAAGAACTCCTACAANTCAATAANAAAAAGACAAACAACCCAATANAAAAATGGGCAAAAGACTTGAACAGACACTTCACAAAAGAAGATATNCAAATGGCCAATAAGCACATGAAAAGATGCTCAACNTCA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1M5_orf2 | IDD11 | 3187 | 3198 | + | 15.31 | AAAAAGACAAAC |
| L1M5_orf2 | blmp-1 | 1150 | 1160 | + | 15.18 | AAAAGAGAGAA |
| L1M5_orf2 | Zic2 | 2496 | 2504 | + | 15.14 | CCCAGCAGG |
| L1M5_orf2 | lsy-2 | 2642 | 2649 | + | 15.13 | CTACAGTA |
| L1M5_orf2 | IDD1 | 3187 | 3198 | - | 15.13 | GTTTGTCTTTTT |
| L1M5_orf2 | ceh-38 | 3018 | 3031 | + | 15.11 | AAAAATTGATAAAT |
| L1M5_orf2 | ZNF324 | 1708 | 1721 | + | 15.06 | ATGCAAGGTTGGTT |
| L1M5_orf2 | NDT80 | 2991 | 2999 | + | 15.06 | GACACAAAA |
| L1M5_orf2 | CDX4 | 626 | 634 | + | 15.02 | GCCATAAAA |
| L1M5_orf2 | PI | 919 | 932 | + | 15.02 | AGAAAAGAAGAAAG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
