HERVFH21
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000182 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Simiiformes |
| Length | 6529 |
| Kimura value | 12.49 |
| Tau index | 0.8642 |
| Description | Internal region of ERV1 endogenous retrovirus, HERVFH21 subfamily |
| Comment | HERVFH21 is the internal region of HERVH-related endogenous retrovirus, and is flanked by LTR21 long terminal repeats, and has 5 bp TSDs. It has a PBS site similar to Phe tRNA binding site in intracisternal A-particles from mouse and hamster genomes. |
| Sequence |
TTCTGGTGCCGAAACCCGGGAAGGGGATAGGCTCTGGCCGGGANTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCCCTCCCCTATCACCCCTCTCCCGGCCGANCTCCCCCTTCCCGAACCTGCCGAAGACCCGGAGGATCTCCTAGACCCTCCCATTGCTGGCGACCNCATCCANCACCAGGGCCTCCGCAGGGGTGAGTNAAAAGAGACTCTTGCCATTCCCCGGAACCCTTGACCGTCCGTCTCTCCNTTCCCGAAAGACCCAGCGCTGGGCCAAGGGCTTCCTCCCGCCTCCGGGCCTCCAGGCGNCCCTCGGTTCCTCCGTTTCAGGGACGCCTGACNCGGCGGTTACCTCCCCTATTCCGGACAAGNCCCGCGGGACAGGGGACGCCCTCTCCCGCCGTCCTTGTCACCGGCAGTCTCTTCTTCCTCTACCCCCCCCTCCTCCATTCACCATGGGAGCCTCTCAGTCTACTCCCTCNAAGACNNCCCCCCTGGGTGTCTCCTCCGCAACCTCAACGCCCTCGGCCTCCGTTCAGAAATCCGNCCNAAAAGGCTTATCTTTTTCAACATNCTCAGACCTAGATAATTTTTGCCATCGAAATGGGAAATGGTCTGAGGTGCCTTACGTCCAGGCATTTTTCACACTTCGTNCCCNCCCTNCCCTCTGTCAGTCCCGTTCCACTTCCCAAATCCTCCTCNCCCNCTCCNANCCTGNCTCGCCTCCTANCCCCCNCCCCACAGCCCCAGCTGACGATTCCTCTTCCTTTGACCCNNCCGACTTTCCCCTTCCCCGNCGGCATCACGNTCCTCCGCCAGAGCGTCCCGATCCTCCACCGTATGCCCCCGCTCCGGCTCTACCTTTCTCCCCTCCTCTCCCCAACCACCCNGCTTCTGACTCTGGGTCCTCTCCNTCTCCACCCCTCACCCGCTCTCNGGCCCAACNTGCCCAGCAACCAGCTCCCCTGCTTCCTCTTAGAGAGGTGGCTGGAGCTGAAGGCATAGTCAGGGTACATGTNCCTTTTTCTCTATCAGACCTTTCCCAAATCAGCCAGCGTTTAGGCTCTTTCTCATCAGACCCCGNCACTTATATACAGGAATTCCAATATCTAACTCNGTCCTACAATTTAACCTGGAGTGACTTAAATGTCATCCTGACTTCTACCCTCTCCCCAGATGAACGGGAAAGATTTNTCTCNTAGCCCAATCTCACGCTGATAACCTTCATGAGCCAGACCCCANNAAGGCNNTAGAGGCCGCCGCAGTTCCCCGAGAGGANCCCCNNCGGGANTACCAGCCCGCAGACCCCGGCCGGGCATCTCGAGATTACATGGTTTCCTGCCTAGTTGAAGGGCTTAAAAAGGCAGCNTACAAAGCTGTTAATTATGACAAGCTTAAAGAAACTACCCAAGGTAAAGACGAAAACCCAGCCCAGTTCATGGCCCGCTTNGCAGCGACCCTNAGACGCTNTACCGCCCTAGACCCNGANGGNCCGGAAGGCCGCCTTATTCTTAATATGCATTTTATCACCCAGTCCGCTCCCGACATTAGGAAAAAGCTTCAAAAATTAGANTCCGGCCCTCAAACCCCACAACAGGACTTAATCAACCTCGCCTTCAAGGTGTNCAATAATAGNGANGAGGNAAGNNAGGCAGCAACANGCAGAGTTNCAANTACTTGCCTCCGCTGTNAGANGCCCTNCAGNCCACGGGACGCAGCTCCACACGGAAGCCTCCTAGCAGTTCACCTCCNCCNGGANCTTGCTTCAAGTGCGGCAANGAAGGCCACTGGGCCAAGGAATGCCCCAGCCCAGGNATTCCTCCTAAGCCGTGCCCCTCTGTGCGGGACCCCACTGGAAGTCGGACTGTNANTNGCCCCCGCAAGGACCGCCCCCANCCCTTCCCGAGCCGGCCGAAACCTCCTTCCCAGATCTCCTCGGCTTAGCGGCTGAAGACTGACGCTGCCCNGGAACGGACGCCCCGGNAGCTACCATCACNGCATCCGAGCTTCGGGTAACTCTTACAGTGGAGGGTAAGTCNGTCCCCTTNNTTTNATCGATACGGGGGCTACCCACTCCGCATTACCTTCTTTTCAAGGGCCCGCTCCGTCCTCCCNNGTCTCTGTTGTGGGTATTGACGGCCAGGCTTCNAAACCCCTTAAAACTCCCCNACTCTGGTGCCACTTGGACAACATTNCTTTTACGCACTCTTTTTTAGTTATCCCCACCTGCCCAGCTCCCTTATTAGGCCGAGACATTTTANCNAAATTNTCCGCTTCCCNTGTNTTCCTGGCNACTACAGCCACANTCCCTCCCGCCCCTCTCCGCCAGTCCAGCCCCTNACCCCTCTCCCCGGCATCCNCTCCCCACCTCCCNCGTTAACCCACAAGTATGGGACACCTCTACTCCCTCCCTGGCGACCGATCACGACCCCATTACCATCCCATTAAAAAATCCCCCTAACCCGCCCAACGNTCNCCAATATCCCATCCCACNAGCACGCTTAAAAGGATTAAAGCCTGTTATCANCNNGCTCTGCTCACGNCGTCTTCTAAAACCTACAAACTCTCCTTACAATTCCCCCATTCTACCTGTCCAAAAACCGGACAAGTCTTACAGGTTAGTTCAGGATCTNCGCCTTATCAACCAAATTGTCTTGCCTATCCACCCCGTGGTGCCNAACCCGTATACTCTCCTNTCNCTCATNCCTTCCTCCACAACCCACTATTCCGTTCTTGACCTNAAAGATGCTTTCTTCACTATTCCCCTGCACCCCTCNTCCCAGCCTCTCTTTGCTTTCACCTGGACTGACCCTGACACCCATCAGTCCCAGCAGCTTACCTGGGCTGTACTGCCGCAAGGCTTCAGGGACAGCCCTCATTACTTCGGCCAAGCTCTTTCTCATGATCTTACTTCCTTNNATCCGTCCCCCNGCCACCTTATTCAATATATTGATGACCTTCTNCTTTGTAGCCCCTCCTTNGAANNCTCCCAAACNCACACTNCCGCCCTTCTAAACTTCTTTNCTAANAAAGGATATCGGGTATCCCCTCCAAAGCNCAAATTTCTNCCTCCATCGTTACCTACCTCGGCATNNAACTCTTCNTNAAAACACGNGCTNTGACCCCTGCCCGAGCGGCCTTAATNGATAANTAATCTACCCCANCCCCTTCTAAAAACGAAATCCTTTCCTTCCTAGGCATGGTTGGATACTTTCGNCTTTGGATACCCGGTTTTGCCATCCTAACNAAACCATTATATAAACTCGCAAAAGGCCCCCTCGATGANCCCCTAAACCCCTCNCNTAACCTACTCCCCANCTTCCGTNNACTCCAAACAGCTCTNGNNACCGCNCCCGCTCTANCCCTNCCCGACNTCTCCCAACCCTTCTCNCTNCACACAGCCGAAGNCCGAGGNNTNGCNCTCGGNGTCTTAGGACAACAGAAGGGAANTCCTCCNTCCTTTGCCCCTGTAGCCTTTCTGTCCAAACAACTTGACCTTACTGTTTTAGGCTGGCCNTCATGTCTCCGNGCGNCGGCNGCNGCCGCCACTTTTAGCCCTCGAAATCACGAAACTAACGCTCAACTNNNNCGNCACTCTCTACAGTTCTCATAACTTCCAAAATCTATTTTCCTCCCGAGCATTANGCTCCCTTTCTGCTCCCCGGCTCCNNTTNCTCTATNCNCTCTTTGTTGAGTCTCCCAAATTCAGTCTTGCCAANAGTGCTCCCTTCAATCCGGCCTCCTTATTCCCGATATCCNCCTCCCCNCCTACCCATTCNTGCACTGATATCCTGATCCACCTGCATTCACNCTTTCCCCATATTTCCTTCTTTCCTGTTCCTCACCCCGNTGATCAACTGTTTATTGATGGCAGTTCCACCAGGCCTAATCGCTCACCCAAAGNNGCAGGCTATGCTATTGTCTTCCACATCTANNTCATTGAGGCTACNNCCCTGCCTCCANNNACTACCTCTCAGCAAGCCGAACTCATTGCCTNTAACTCGAGCCCTCACTCTTGCAAAAGGACTACGCGTCAATATTTATACTGACTCTAAATATGCCTTCCATATCCTGCACCACCATGCTGTTATATGGGCNGAAAGAGGTTTCCTCACTACGCAAGGGTCCTCCATCATTAATGCCTCCNNTTAATTAAAAACTCCTTNAGGCCGCTTTACTTCCAAAGGAAGCTGGAGTCATTCACTGCAAGGGCCATCAAANAGGCTCAGANNNNCCNNTGANNCGNCGNATCAATCTCAAGAGGNAACANNAANGCCGATAAGGCAGCAAAAAACAGNACCTCAAAAGGGATCAGANNTGAAATCTCAAGAGGNAACGNNNANGCCGATGAGGCAGCAAAAGAAGCCTCCCTTTCTTCTGTCCCTGCCTCTCTCCTCCTCATTACCCCNGCANTCCNACCCAAGTACTCCCCCACTNAGAAANNGCTTCGCTACTACAGCAAGGAGCCTCCCTCCAAGGGGACTGGATAGTCAAAGATCAAAAGCTCNTCCTCCCCCAAGAGCAAGCCAANNNNATTCTGACATCNCTTCACCAACCCTTCCATGTNGGTGCGCGCCCCCNGTACCTGCCCCTTCGCCCTCATTTCTCCTCCCCCCATCTATTCACCTCACTAAAGGACATAACCTCNAACTGTCNCATNTGCTNTGCTACTTCCTCCCAAGGGGCCCTCCGCTCTCCCCCCATCCCTACACATCAGCTCAGAGGANCGCTCCCAGGGNAGGACTGGCAAATNGACTTCACCCACATGCCTCCCGTCAAGAAAACAAAATATCTTCTTANTCTNGTAGACACTTTCNCTGGNTGGGTAGAGGCNTTTCCCACNNCNTCNGAGAAGGCCGCNGNAGTCTCCCAAATTCTCGTAACAGANATNATCCCTNGGTTTGGCCTCCCCANCTCCATACAGTCNGACAACGGNCCNTAGCTTCATCNNCCAAATCACCCAACCGGTTTCTCAGNCCCTTGGTATTCAGTGGCGCCTCCATATCCCNTACCGNCCCCAGTCNTCAGGAAAAGTCGAAAGGGCAAATGGNATTCTNAAAACNCAGTTNACCAAACTCACCCTCGAAGTCNAAAAACCNTGGACCTCCCTTTTACCCATAGCNCTGGCCCGCATCAGAGCCAGTCCAAAAGCACCCTCCTTCCTCAGTCCATTTGAGTTAATGTATGGACGCCCTTTCCTCTTACAAAACAGGCCCCCTCCTAACTCTCAGTTAGGAGAATACCTCCCAACACTCTCCCTCATCCGCCATCTCCTCCGCGAACAAGCNGACCAGGNCCCTCCCAAAACCCCACGAAGGCCCTTGACACCTCCCACCTCCTTAACAAAAATTCAGGGTACTGCAACGGCCGACACCTCCCCTGTTTATCCCTCTTCCCTTGGCTCCCCTCTCCGTGCACCATCCCTGCCCNNNACCCACCACCCGCGACTGTCTCCTTATCCCANCGTTCAACAACACTCCCACANGNNTCTTAGTGGACACAAAACGCTTCCTCCTACACTGGGAAAAAAAAAAANNAACNCAAAGAGCCNCCCAGCCTAANCCAAACACCCCCTTACAACCACTCNCCGCAGCGGCCCTAGCCGGCACCCTAGGAGCATGGATGCACGAGGACAACAAAATTNTACACCTTTTTAGCATACACAACCAGTTCTGCCTACCNAGCCAAGGCATATTCTTCCTATGCGGCACCTCNACCTATNTCTGCCTCCCCNCCAACTGGACAGGCACCTNCGCACCCTGGTTTTCCTCAGCCCNAAAATCGACGTTGCCCCAGGAGACCAACCCCTACCAATCCCNGTTAANACCCANATCCGACACCGCCGNGCCATACAGCTCATACCCCTNCTAGTAGGCCTAGGAATNACNGCAGNAGTNGGAACCGGAGTNGCGGGATTNGCNACCTCCCTNTCCTATTACCAATCCCTCTCCAAAGACCTTACGGANAGCTTGGAAGACATNGCCAANTCCATTNCNACCCTCCAANCNCAAATAGACTCTTAGCAGCAGTCGCCCTNCAAAACCGCAGAGGCCTNGACCTNCTCACCGCCGAAAAAGGAGGNCTCTGCNTCTTTCTAGATGAANAGTGCTGCTTTTATCTCAACCAGTCAGGCTTAGTNCAAGATGCNGTCAAAAAACTNAAAGACCGAGCNCAAAAAATCAAAGAAAACGTCCTCTGCTGGCCCNCNTGGCCCTCNTGGTCCCTCAGCNCCTGGGCTCCCTGGCTACTGCCCCTCCTNGGCCCNGCCATAACCNTTCTTCTCCTTCTAGCNTTCGGNCCCTGCCTCNTACGCCTCCTCACCCAGTTTTTACAGGACCGTATCAGAGCCTTCACCCACGGAACAATACAAGATATGATGCTGCTCCAGGAATACCGACGGCTCCAAGAACGGCAGTCCCTACCNTCCAGCCTTTCCCCNCAACCGCCGCCCCTTCCCAGCNNGAAGCAGCCAGACGACAACGGCGCCCCTCTTCTATTACCTATTAAAAGGCTGGAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| HERVFH21 | BPC5 | 62 | 91 | - | 31.84 | GGAGGGAGAGGGAGAGAGAGAGAGAGAGAG |
| HERVFH21 | BPC1 | 67 | 90 | - | 31.27 | GAGGGAGAGGGAGAGAGAGAGAGA |
| HERVFH21 | BPC1 | 69 | 92 | - | 29.21 | GGGAGGGAGAGGGAGAGAGAGAGA |
| HERVFH21 | BPC1 | 71 | 94 | - | 26.67 | AGGGGAGGGAGAGGGAGAGAGAGA |
| HERVFH21 | RAMOSA1 | 49 | 62 | - | 25.64 | GAGAGAGAGAGAGA |
| HERVFH21 | RAMOSA1 | 51 | 64 | - | 25.64 | GAGAGAGAGAGAGA |
| HERVFH21 | RAMOSA1 | 53 | 66 | - | 25.64 | GAGAGAGAGAGAGA |
| HERVFH21 | RAMOSA1 | 55 | 68 | - | 25.64 | GAGAGAGAGAGAGA |
| HERVFH21 | RAMOSA1 | 57 | 70 | - | 25.64 | GAGAGAGAGAGAGA |
| HERVFH21 | RAMOSA1 | 59 | 72 | - | 25.64 | GAGAGAGAGAGAGA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
