HERVFH21

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0000182
TE superfamily	ERV1
TE class	LTR
Species	Simiiformes
Length	6529
Kimura value	12.49
Tau index	0.8642
Description	Internal region of ERV1 endogenous retrovirus, HERVFH21 subfamily
Comment	HERVFH21 is the internal region of HERVH-related endogenous retrovirus, and is flanked by LTR21 long terminal repeats, and has 5 bp TSDs. It has a PBS site similar to Phe tRNA binding site in intracisternal A-particles from mouse and hamster genomes.
Sequence	TTCTGGTGCCGAAACCCGGGAAGGGGATAGGCTCTGGCCGGGANTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCCCTCCCCTATCACCCCTCTCCCGGCCGANCTCCCCCTTCCCGAACCTGCCGAAGACCCGGAGGATCTCCTAGACCCTCCCATTGCTGGCGACCNCATCCANCACCAGGGCCTCCGCAGGGGTGAGTNAAAAGAGACTCTTGCCATTCCCCGGAACCCTTGACCGTCCGTCTCTCCNTTCCCGAAAGACCCAGCGCTGGGCCAAGGGCTTCCTCCCGCCTCCGGGCCTCCAGGCGNCCCTCGGTTCCTCCGTTTCAGGGACGCCTGACNCGGCGGTTACCTCCCCTATTCCGGACAAGNCCCGCGGGACAGGGGACGCCCTCTCCCGCCGTCCTTGTCACCGGCAGTCTCTTCTTCCTCTACCCCCCCCTCCTCCATTCACCATGGGAGCCTCTCAGTCTACTCCCTCNAAGACNNCCCCCCTGGGTGTCTCCTCCGCAACCTCAACGCCCTCGGCCTCCGTTCAGAAATCCGNCCNAAAAGGCTTATCTTTTTCAACATNCTCAGACCTAGATAATTTTTGCCATCGAAATGGGAAATGGTCTGAGGTGCCTTACGTCCAGGCATTTTTCACACTTCGTNCCCNCCCTNCCCTCTGTCAGTCCCGTTCCACTTCCCAAATCCTCCTCNCCCNCTCCNANCCTGNCTCGCCTCCTANCCCCCNCCCCACAGCCCCAGCTGACGATTCCTCTTCCTTTGACCCNNCCGACTTTCCCCTTCCCCGNCGGCATCACGNTCCTCCGCCAGAGCGTCCCGATCCTCCACCGTATGCCCCCGCTCCGGCTCTACCTTTCTCCCCTCCTCTCCCCAACCACCCNGCTTCTGACTCTGGGTCCTCTCCNTCTCCACCCCTCACCCGCTCTCNGGCCCAACNTGCCCAGCAACCAGCTCCCCTGCTTCCTCTTAGAGAGGTGGCTGGAGCTGAAGGCATAGTCAGGGTACATGTNCCTTTTTCTCTATCAGACCTTTCCCAAATCAGCCAGCGTTTAGGCTCTTTCTCATCAGACCCCGNCACTTATATACAGGAATTCCAATATCTAACTCNGTCCTACAATTTAACCTGGAGTGACTTAAATGTCATCCTGACTTCTACCCTCTCCCCAGATGAACGGGAAAGATTTNTCTCNTAGCCCAATCTCACGCTGATAACCTTCATGAGCCAGACCCCANNAAGGCNNTAGAGGCCGCCGCAGTTCCCCGAGAGGANCCCCNNCGGGANTACCAGCCCGCAGACCCCGGCCGGGCATCTCGAGATTACATGGTTTCCTGCCTAGTTGAAGGGCTTAAAAAGGCAGCNTACAAAGCTGTTAATTATGACAAGCTTAAAGAAACTACCCAAGGTAAAGACGAAAACCCAGCCCAGTTCATGGCCCGCTTNGCAGCGACCCTNAGACGCTNTACCGCCCTAGACCCNGANGGNCCGGAAGGCCGCCTTATTCTTAATATGCATTTTATCACCCAGTCCGCTCCCGACATTAGGAAAAAGCTTCAAAAATTAGANTCCGGCCCTCAAACCCCACAACAGGACTTAATCAACCTCGCCTTCAAGGTGTNCAATAATAGNGANGAGGNAAGNNAGGCAGCAACANGCAGAGTTNCAANTACTTGCCTCCGCTGTNAGANGCCCTNCAGNCCACGGGACGCAGCTCCACACGGAAGCCTCCTAGCAGTTCACCTCCNCCNGGANCTTGCTTCAAGTGCGGCAANGAAGGCCACTGGGCCAAGGAATGCCCCAGCCCAGGNATTCCTCCTAAGCCGTGCCCCTCTGTGCGGGACCCCACTGGAAGTCGGACTGTNANTNGCCCCCGCAAGGACCGCCCCCANCCCTTCCCGAGCCGGCCGAAACCTCCTTCCCAGATCTCCTCGGCTTAGCGGCTGAAGACTGACGCTGCCCNGGAACGGACGCCCCGGNAGCTACCATCACNGCATCCGAGCTTCGGGTAACTCTTACAGTGGAGGGTAAGTCNGTCCCCTTNNTTTNATCGATACGGGGGCTACCCACTCCGCATTACCTTCTTTTCAAGGGCCCGCTCCGTCCTCCCNNGTCTCTGTTGTGGGTATTGACGGCCAGGCTTCNAAACCCCTTAAAACTCCCCNACTCTGGTGCCACTTGGACAACATTNCTTTTACGCACTCTTTTTTAGTTATCCCCACCTGCCCAGCTCCCTTATTAGGCCGAGACATTTTANCNAAATTNTCCGCTTCCCNTGTNTTCCTGGCNACTACAGCCACANTCCCTCCCGCCCCTCTCCGCCAGTCCAGCCCCTNACCCCTCTCCCCGGCATCCNCTCCCCACCTCCCNCGTTAACCCACAAGTATGGGACACCTCTACTCCCTCCCTGGCGACCGATCACGACCCCATTACCATCCCATTAAAAAATCCCCCTAACCCGCCCAACGNTCNCCAATATCCCATCCCACNAGCACGCTTAAAAGGATTAAAGCCTGTTATCANCNNGCTCTGCTCACGNCGTCTTCTAAAACCTACAAACTCTCCTTACAATTCCCCCATTCTACCTGTCCAAAAACCGGACAAGTCTTACAGGTTAGTTCAGGATCTNCGCCTTATCAACCAAATTGTCTTGCCTATCCACCCCGTGGTGCCNAACCCGTATACTCTCCTNTCNCTCATNCCTTCCTCCACAACCCACTATTCCGTTCTTGACCTNAAAGATGCTTTCTTCACTATTCCCCTGCACCCCTCNTCCCAGCCTCTCTTTGCTTTCACCTGGACTGACCCTGACACCCATCAGTCCCAGCAGCTTACCTGGGCTGTACTGCCGCAAGGCTTCAGGGACAGCCCTCATTACTTCGGCCAAGCTCTTTCTCATGATCTTACTTCCTTNNATCCGTCCCCCNGCCACCTTATTCAATATATTGATGACCTTCTNCTTTGTAGCCCCTCCTTNGAANNCTCCCAAACNCACACTNCCGCCCTTCTAAACTTCTTTNCTAANAAAGGATATCGGGTATCCCCTCCAAAGCNCAAATTTCTNCCTCCATCGTTACCTACCTCGGCATNNAACTCTTCNTNAAAACACGNGCTNTGACCCCTGCCCGAGCGGCCTTAATNGATAANTAATCTACCCCANCCCCTTCTAAAAACGAAATCCTTTCCTTCCTAGGCATGGTTGGATACTTTCGNCTTTGGATACCCGGTTTTGCCATCCTAACNAAACCATTATATAAACTCGCAAAAGGCCCCCTCGATGANCCCCTAAACCCCTCNCNTAACCTACTCCCCANCTTCCGTNNACTCCAAACAGCTCTNGNNACCGCNCCCGCTCTANCCCTNCCCGACNTCTCCCAACCCTTCTCNCTNCACACAGCCGAAGNCCGAGGNNTNGCNCTCGGNGTCTTAGGACAACAGAAGGGAANTCCTCCNTCCTTTGCCCCTGTAGCCTTTCTGTCCAAACAACTTGACCTTACTGTTTTAGGCTGGCCNTCATGTCTCCGNGCGNCGGCNGCNGCCGCCACTTTTAGCCCTCGAAATCACGAAACTAACGCTCAACTNNNNCGNCACTCTCTACAGTTCTCATAACTTCCAAAATCTATTTTCCTCCCGAGCATTANGCTCCCTTTCTGCTCCCCGGCTCCNNTTNCTCTATNCNCTCTTTGTTGAGTCTCCCAAATTCAGTCTTGCCAANAGTGCTCCCTTCAATCCGGCCTCCTTATTCCCGATATCCNCCTCCCCNCCTACCCATTCNTGCACTGATATCCTGATCCACCTGCATTCACNCTTTCCCCATATTTCCTTCTTTCCTGTTCCTCACCCCGNTGATCAACTGTTTATTGATGGCAGTTCCACCAGGCCTAATCGCTCACCCAAAGNNGCAGGCTATGCTATTGTCTTCCACATCTANNTCATTGAGGCTACNNCCCTGCCTCCANNNACTACCTCTCAGCAAGCCGAACTCATTGCCTNTAACTCGAGCCCTCACTCTTGCAAAAGGACTACGCGTCAATATTTATACTGACTCTAAATATGCCTTCCATATCCTGCACCACCATGCTGTTATATGGGCNGAAAGAGGTTTCCTCACTACGCAAGGGTCCTCCATCATTAATGCCTCCNNTTAATTAAAAACTCCTTNAGGCCGCTTTACTTCCAAAGGAAGCTGGAGTCATTCACTGCAAGGGCCATCAAANAGGCTCAGANNNNCCNNTGANNCGNCGNATCAATCTCAAGAGGNAACANNAANGCCGATAAGGCAGCAAAAAACAGNACCTCAAAAGGGATCAGANNTGAAATCTCAAGAGGNAACGNNNANGCCGATGAGGCAGCAAAAGAAGCCTCCCTTTCTTCTGTCCCTGCCTCTCTCCTCCTCATTACCCCNGCANTCCNACCCAAGTACTCCCCCACTNAGAAANNGCTTCGCTACTACAGCAAGGAGCCTCCCTCCAAGGGGACTGGATAGTCAAAGATCAAAAGCTCNTCCTCCCCCAAGAGCAAGCCAANNNNATTCTGACATCNCTTCACCAACCCTTCCATGTNGGTGCGCGCCCCCNGTACCTGCCCCTTCGCCCTCATTTCTCCTCCCCCCATCTATTCACCTCACTAAAGGACATAACCTCNAACTGTCNCATNTGCTNTGCTACTTCCTCCCAAGGGGCCCTCCGCTCTCCCCCCATCCCTACACATCAGCTCAGAGGANCGCTCCCAGGGNAGGACTGGCAAATNGACTTCACCCACATGCCTCCCGTCAAGAAAACAAAATATCTTCTTANTCTNGTAGACACTTTCNCTGGNTGGGTAGAGGCNTTTCCCACNNCNTCNGAGAAGGCCGCNGNAGTCTCCCAAATTCTCGTAACAGANATNATCCCTNGGTTTGGCCTCCCCANCTCCATACAGTCNGACAACGGNCCNTAGCTTCATCNNCCAAATCACCCAACCGGTTTCTCAGNCCCTTGGTATTCAGTGGCGCCTCCATATCCCNTACCGNCCCCAGTCNTCAGGAAAAGTCGAAAGGGCAAATGGNATTCTNAAAACNCAGTTNACCAAACTCACCCTCGAAGTCNAAAAACCNTGGACCTCCCTTTTACCCATAGCNCTGGCCCGCATCAGAGCCAGTCCAAAAGCACCCTCCTTCCTCAGTCCATTTGAGTTAATGTATGGACGCCCTTTCCTCTTACAAAACAGGCCCCCTCCTAACTCTCAGTTAGGAGAATACCTCCCAACACTCTCCCTCATCCGCCATCTCCTCCGCGAACAAGCNGACCAGGNCCCTCCCAAAACCCCACGAAGGCCCTTGACACCTCCCACCTCCTTAACAAAAATTCAGGGTACTGCAACGGCCGACACCTCCCCTGTTTATCCCTCTTCCCTTGGCTCCCCTCTCCGTGCACCATCCCTGCCCNNNACCCACCACCCGCGACTGTCTCCTTATCCCANCGTTCAACAACACTCCCACANGNNTCTTAGTGGACACAAAACGCTTCCTCCTACACTGGGAAAAAAAAAAANNAACNCAAAGAGCCNCCCAGCCTAANCCAAACACCCCCTTACAACCACTCNCCGCAGCGGCCCTAGCCGGCACCCTAGGAGCATGGATGCACGAGGACAACAAAATTNTACACCTTTTTAGCATACACAACCAGTTCTGCCTACCNAGCCAAGGCATATTCTTCCTATGCGGCACCTCNACCTATNTCTGCCTCCCCNCCAACTGGACAGGCACCTNCGCACCCTGGTTTTCCTCAGCCCNAAAATCGACGTTGCCCCAGGAGACCAACCCCTACCAATCCCNGTTAANACCCANATCCGACACCGCCGNGCCATACAGCTCATACCCCTNCTAGTAGGCCTAGGAATNACNGCAGNAGTNGGAACCGGAGTNGCGGGATTNGCNACCTCCCTNTCCTATTACCAATCCCTCTCCAAAGACCTTACGGANAGCTTGGAAGACATNGCCAANTCCATTNCNACCCTCCAANCNCAAATAGACTCTTAGCAGCAGTCGCCCTNCAAAACCGCAGAGGCCTNGACCTNCTCACCGCCGAAAAAGGAGGNCTCTGCNTCTTTCTAGATGAANAGTGCTGCTTTTATCTCAACCAGTCAGGCTTAGTNCAAGATGCNGTCAAAAAACTNAAAGACCGAGCNCAAAAAATCAAAGAAAACGTCCTCTGCTGGCCCNCNTGGCCCTCNTGGTCCCTCAGCNCCTGGGCTCCCTGGCTACTGCCCCTCCTNGGCCCNGCCATAACCNTTCTTCTCCTTCTAGCNTTCGGNCCCTGCCTCNTACGCCTCCTCACCCAGTTTTTACAGGACCGTATCAGAGCCTTCACCCACGGAACAATACAAGATATGATGCTGCTCCAGGAATACCGACGGCTCCAAGAACGGCAGTCCCTACCNTCCAGCCTTTCCCCNCAACCGCCGCCCCTTCCCAGCNNGAAGCAGCCAGACGACAACGGCGCCCCTCTTCTATTACCTATTAAAAGGCTGGAA

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
HERVFH21	BPC5	48	77	-	59.00	AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
HERVFH21	BPC5	50	79	-	59.00	AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
HERVFH21	BPC5	52	81	-	55.54	GGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
HERVFH21	BPC5	46	75	-	47.17	AGAGAGAGAGAGAGAGAGAGAGAGAGAGTG
HERVFH21	BPC5	56	85	-	47.17	AGAGGGAGAGAGAGAGAGAGAGAGAGAGAG
HERVFH21	BPC5	54	83	-	47.13	AGGGAGAGAGAGAGAGAGAGAGAGAGAGAG
HERVFH21	BPC5	58	87	-	43.72	GGAGAGGGAGAGAGAGAGAGAGAGAGAGAG
HERVFH21	BPC1	49	72	-	43.52	GAGAGAGAGAGAGAGAGAGAGAGA
HERVFH21	BPC1	51	74	-	43.52	GAGAGAGAGAGAGAGAGAGAGAGA
HERVFH21	BPC1	53	76	-	43.52	GAGAGAGAGAGAGAGAGAGAGAGA

1 2 3 4 ... 200

TFBS enrichment in GRCh38

Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

GTEx

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

TCGA

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).