HERVFH21
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000182 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Simiiformes |
| Length | 6529 |
| Kimura value | 12.49 |
| Tau index | 0.8642 |
| Description | Internal region of ERV1 endogenous retrovirus, HERVFH21 subfamily |
| Comment | HERVFH21 is the internal region of HERVH-related endogenous retrovirus, and is flanked by LTR21 long terminal repeats, and has 5 bp TSDs. It has a PBS site similar to Phe tRNA binding site in intracisternal A-particles from mouse and hamster genomes. |
| Sequence |
TTCTGGTGCCGAAACCCGGGAAGGGGATAGGCTCTGGCCGGGANTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCCCTCCCCTATCACCCCTCTCCCGGCCGANCTCCCCCTTCCCGAACCTGCCGAAGACCCGGAGGATCTCCTAGACCCTCCCATTGCTGGCGACCNCATCCANCACCAGGGCCTCCGCAGGGGTGAGTNAAAAGAGACTCTTGCCATTCCCCGGAACCCTTGACCGTCCGTCTCTCCNTTCCCGAAAGACCCAGCGCTGGGCCAAGGGCTTCCTCCCGCCTCCGGGCCTCCAGGCGNCCCTCGGTTCCTCCGTTTCAGGGACGCCTGACNCGGCGGTTACCTCCCCTATTCCGGACAAGNCCCGCGGGACAGGGGACGCCCTCTCCCGCCGTCCTTGTCACCGGCAGTCTCTTCTTCCTCTACCCCCCCCTCCTCCATTCACCATGGGAGCCTCTCAGTCTACTCCCTCNAAGACNNCCCCCCTGGGTGTCTCCTCCGCAACCTCAACGCCCTCGGCCTCCGTTCAGAAATCCGNCCNAAAAGGCTTATCTTTTTCAACATNCTCAGACCTAGATAATTTTTGCCATCGAAATGGGAAATGGTCTGAGGTGCCTTACGTCCAGGCATTTTTCACACTTCGTNCCCNCCCTNCCCTCTGTCAGTCCCGTTCCACTTCCCAAATCCTCCTCNCCCNCTCCNANCCTGNCTCGCCTCCTANCCCCCNCCCCACAGCCCCAGCTGACGATTCCTCTTCCTTTGACCCNNCCGACTTTCCCCTTCCCCGNCGGCATCACGNTCCTCCGCCAGAGCGTCCCGATCCTCCACCGTATGCCCCCGCTCCGGCTCTACCTTTCTCCCCTCCTCTCCCCAACCACCCNGCTTCTGACTCTGGGTCCTCTCCNTCTCCACCCCTCACCCGCTCTCNGGCCCAACNTGCCCAGCAACCAGCTCCCCTGCTTCCTCTTAGAGAGGTGGCTGGAGCTGAAGGCATAGTCAGGGTACATGTNCCTTTTTCTCTATCAGACCTTTCCCAAATCAGCCAGCGTTTAGGCTCTTTCTCATCAGACCCCGNCACTTATATACAGGAATTCCAATATCTAACTCNGTCCTACAATTTAACCTGGAGTGACTTAAATGTCATCCTGACTTCTACCCTCTCCCCAGATGAACGGGAAAGATTTNTCTCNTAGCCCAATCTCACGCTGATAACCTTCATGAGCCAGACCCCANNAAGGCNNTAGAGGCCGCCGCAGTTCCCCGAGAGGANCCCCNNCGGGANTACCAGCCCGCAGACCCCGGCCGGGCATCTCGAGATTACATGGTTTCCTGCCTAGTTGAAGGGCTTAAAAAGGCAGCNTACAAAGCTGTTAATTATGACAAGCTTAAAGAAACTACCCAAGGTAAAGACGAAAACCCAGCCCAGTTCATGGCCCGCTTNGCAGCGACCCTNAGACGCTNTACCGCCCTAGACCCNGANGGNCCGGAAGGCCGCCTTATTCTTAATATGCATTTTATCACCCAGTCCGCTCCCGACATTAGGAAAAAGCTTCAAAAATTAGANTCCGGCCCTCAAACCCCACAACAGGACTTAATCAACCTCGCCTTCAAGGTGTNCAATAATAGNGANGAGGNAAGNNAGGCAGCAACANGCAGAGTTNCAANTACTTGCCTCCGCTGTNAGANGCCCTNCAGNCCACGGGACGCAGCTCCACACGGAAGCCTCCTAGCAGTTCACCTCCNCCNGGANCTTGCTTCAAGTGCGGCAANGAAGGCCACTGGGCCAAGGAATGCCCCAGCCCAGGNATTCCTCCTAAGCCGTGCCCCTCTGTGCGGGACCCCACTGGAAGTCGGACTGTNANTNGCCCCCGCAAGGACCGCCCCCANCCCTTCCCGAGCCGGCCGAAACCTCCTTCCCAGATCTCCTCGGCTTAGCGGCTGAAGACTGACGCTGCCCNGGAACGGACGCCCCGGNAGCTACCATCACNGCATCCGAGCTTCGGGTAACTCTTACAGTGGAGGGTAAGTCNGTCCCCTTNNTTTNATCGATACGGGGGCTACCCACTCCGCATTACCTTCTTTTCAAGGGCCCGCTCCGTCCTCCCNNGTCTCTGTTGTGGGTATTGACGGCCAGGCTTCNAAACCCCTTAAAACTCCCCNACTCTGGTGCCACTTGGACAACATTNCTTTTACGCACTCTTTTTTAGTTATCCCCACCTGCCCAGCTCCCTTATTAGGCCGAGACATTTTANCNAAATTNTCCGCTTCCCNTGTNTTCCTGGCNACTACAGCCACANTCCCTCCCGCCCCTCTCCGCCAGTCCAGCCCCTNACCCCTCTCCCCGGCATCCNCTCCCCACCTCCCNCGTTAACCCACAAGTATGGGACACCTCTACTCCCTCCCTGGCGACCGATCACGACCCCATTACCATCCCATTAAAAAATCCCCCTAACCCGCCCAACGNTCNCCAATATCCCATCCCACNAGCACGCTTAAAAGGATTAAAGCCTGTTATCANCNNGCTCTGCTCACGNCGTCTTCTAAAACCTACAAACTCTCCTTACAATTCCCCCATTCTACCTGTCCAAAAACCGGACAAGTCTTACAGGTTAGTTCAGGATCTNCGCCTTATCAACCAAATTGTCTTGCCTATCCACCCCGTGGTGCCNAACCCGTATACTCTCCTNTCNCTCATNCCTTCCTCCACAACCCACTATTCCGTTCTTGACCTNAAAGATGCTTTCTTCACTATTCCCCTGCACCCCTCNTCCCAGCCTCTCTTTGCTTTCACCTGGACTGACCCTGACACCCATCAGTCCCAGCAGCTTACCTGGGCTGTACTGCCGCAAGGCTTCAGGGACAGCCCTCATTACTTCGGCCAAGCTCTTTCTCATGATCTTACTTCCTTNNATCCGTCCCCCNGCCACCTTATTCAATATATTGATGACCTTCTNCTTTGTAGCCCCTCCTTNGAANNCTCCCAAACNCACACTNCCGCCCTTCTAAACTTCTTTNCTAANAAAGGATATCGGGTATCCCCTCCAAAGCNCAAATTTCTNCCTCCATCGTTACCTACCTCGGCATNNAACTCTTCNTNAAAACACGNGCTNTGACCCCTGCCCGAGCGGCCTTAATNGATAANTAATCTACCCCANCCCCTTCTAAAAACGAAATCCTTTCCTTCCTAGGCATGGTTGGATACTTTCGNCTTTGGATACCCGGTTTTGCCATCCTAACNAAACCATTATATAAACTCGCAAAAGGCCCCCTCGATGANCCCCTAAACCCCTCNCNTAACCTACTCCCCANCTTCCGTNNACTCCAAACAGCTCTNGNNACCGCNCCCGCTCTANCCCTNCCCGACNTCTCCCAACCCTTCTCNCTNCACACAGCCGAAGNCCGAGGNNTNGCNCTCGGNGTCTTAGGACAACAGAAGGGAANTCCTCCNTCCTTTGCCCCTGTAGCCTTTCTGTCCAAACAACTTGACCTTACTGTTTTAGGCTGGCCNTCATGTCTCCGNGCGNCGGCNGCNGCCGCCACTTTTAGCCCTCGAAATCACGAAACTAACGCTCAACTNNNNCGNCACTCTCTACAGTTCTCATAACTTCCAAAATCTATTTTCCTCCCGAGCATTANGCTCCCTTTCTGCTCCCCGGCTCCNNTTNCTCTATNCNCTCTTTGTTGAGTCTCCCAAATTCAGTCTTGCCAANAGTGCTCCCTTCAATCCGGCCTCCTTATTCCCGATATCCNCCTCCCCNCCTACCCATTCNTGCACTGATATCCTGATCCACCTGCATTCACNCTTTCCCCATATTTCCTTCTTTCCTGTTCCTCACCCCGNTGATCAACTGTTTATTGATGGCAGTTCCACCAGGCCTAATCGCTCACCCAAAGNNGCAGGCTATGCTATTGTCTTCCACATCTANNTCATTGAGGCTACNNCCCTGCCTCCANNNACTACCTCTCAGCAAGCCGAACTCATTGCCTNTAACTCGAGCCCTCACTCTTGCAAAAGGACTACGCGTCAATATTTATACTGACTCTAAATATGCCTTCCATATCCTGCACCACCATGCTGTTATATGGGCNGAAAGAGGTTTCCTCACTACGCAAGGGTCCTCCATCATTAATGCCTCCNNTTAATTAAAAACTCCTTNAGGCCGCTTTACTTCCAAAGGAAGCTGGAGTCATTCACTGCAAGGGCCATCAAANAGGCTCAGANNNNCCNNTGANNCGNCGNATCAATCTCAAGAGGNAACANNAANGCCGATAAGGCAGCAAAAAACAGNACCTCAAAAGGGATCAGANNTGAAATCTCAAGAGGNAACGNNNANGCCGATGAGGCAGCAAAAGAAGCCTCCCTTTCTTCTGTCCCTGCCTCTCTCCTCCTCATTACCCCNGCANTCCNACCCAAGTACTCCCCCACTNAGAAANNGCTTCGCTACTACAGCAAGGAGCCTCCCTCCAAGGGGACTGGATAGTCAAAGATCAAAAGCTCNTCCTCCCCCAAGAGCAAGCCAANNNNATTCTGACATCNCTTCACCAACCCTTCCATGTNGGTGCGCGCCCCCNGTACCTGCCCCTTCGCCCTCATTTCTCCTCCCCCCATCTATTCACCTCACTAAAGGACATAACCTCNAACTGTCNCATNTGCTNTGCTACTTCCTCCCAAGGGGCCCTCCGCTCTCCCCCCATCCCTACACATCAGCTCAGAGGANCGCTCCCAGGGNAGGACTGGCAAATNGACTTCACCCACATGCCTCCCGTCAAGAAAACAAAATATCTTCTTANTCTNGTAGACACTTTCNCTGGNTGGGTAGAGGCNTTTCCCACNNCNTCNGAGAAGGCCGCNGNAGTCTCCCAAATTCTCGTAACAGANATNATCCCTNGGTTTGGCCTCCCCANCTCCATACAGTCNGACAACGGNCCNTAGCTTCATCNNCCAAATCACCCAACCGGTTTCTCAGNCCCTTGGTATTCAGTGGCGCCTCCATATCCCNTACCGNCCCCAGTCNTCAGGAAAAGTCGAAAGGGCAAATGGNATTCTNAAAACNCAGTTNACCAAACTCACCCTCGAAGTCNAAAAACCNTGGACCTCCCTTTTACCCATAGCNCTGGCCCGCATCAGAGCCAGTCCAAAAGCACCCTCCTTCCTCAGTCCATTTGAGTTAATGTATGGACGCCCTTTCCTCTTACAAAACAGGCCCCCTCCTAACTCTCAGTTAGGAGAATACCTCCCAACACTCTCCCTCATCCGCCATCTCCTCCGCGAACAAGCNGACCAGGNCCCTCCCAAAACCCCACGAAGGCCCTTGACACCTCCCACCTCCTTAACAAAAATTCAGGGTACTGCAACGGCCGACACCTCCCCTGTTTATCCCTCTTCCCTTGGCTCCCCTCTCCGTGCACCATCCCTGCCCNNNACCCACCACCCGCGACTGTCTCCTTATCCCANCGTTCAACAACACTCCCACANGNNTCTTAGTGGACACAAAACGCTTCCTCCTACACTGGGAAAAAAAAAAANNAACNCAAAGAGCCNCCCAGCCTAANCCAAACACCCCCTTACAACCACTCNCCGCAGCGGCCCTAGCCGGCACCCTAGGAGCATGGATGCACGAGGACAACAAAATTNTACACCTTTTTAGCATACACAACCAGTTCTGCCTACCNAGCCAAGGCATATTCTTCCTATGCGGCACCTCNACCTATNTCTGCCTCCCCNCCAACTGGACAGGCACCTNCGCACCCTGGTTTTCCTCAGCCCNAAAATCGACGTTGCCCCAGGAGACCAACCCCTACCAATCCCNGTTAANACCCANATCCGACACCGCCGNGCCATACAGCTCATACCCCTNCTAGTAGGCCTAGGAATNACNGCAGNAGTNGGAACCGGAGTNGCGGGATTNGCNACCTCCCTNTCCTATTACCAATCCCTCTCCAAAGACCTTACGGANAGCTTGGAAGACATNGCCAANTCCATTNCNACCCTCCAANCNCAAATAGACTCTTAGCAGCAGTCGCCCTNCAAAACCGCAGAGGCCTNGACCTNCTCACCGCCGAAAAAGGAGGNCTCTGCNTCTTTCTAGATGAANAGTGCTGCTTTTATCTCAACCAGTCAGGCTTAGTNCAAGATGCNGTCAAAAAACTNAAAGACCGAGCNCAAAAAATCAAAGAAAACGTCCTCTGCTGGCCCNCNTGGCCCTCNTGGTCCCTCAGCNCCTGGGCTCCCTGGCTACTGCCCCTCCTNGGCCCNGCCATAACCNTTCTTCTCCTTCTAGCNTTCGGNCCCTGCCTCNTACGCCTCCTCACCCAGTTTTTACAGGACCGTATCAGAGCCTTCACCCACGGAACAATACAAGATATGATGCTGCTCCAGGAATACCGACGGCTCCAAGAACGGCAGTCCCTACCNTCCAGCCTTTCCCCNCAACCGCCGCCCCTTCCCAGCNNGAAGCAGCCAGACGACAACGGCGCCCCTCTTCTATTACCTATTAAAAGGCTGGAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| HERVFH21 | BPC5 | 4390 | 4419 | - | -32.28 | GGGTAATGAGGAGGAGAGAGGCAGGGACAG |
| HERVFH21 | BPC5 | 862 | 891 | - | -34.89 | GGAGAGGAGGGGAGAAAGGTAGAGCCGGAG |
| HERVFH21 | BPC5 | 76 | 105 | - | -37.00 | AGAGGGGTGATAGGGGAGGGAGAGGGAGAG |
| HERVFH21 | BPC5 | 868 | 897 | - | -39.02 | GGTTGGGGAGAGGAGGGGAGAAAGGTAGAG |
| HERVFH21 | BPC5 | 4386 | 4415 | - | -41.72 | AATGAGGAGGAGAGAGGCAGGGACAGAAGA |
| HERVFH21 | BPC5 | 78 | 107 | - | -45.32 | GGAGAGGGGTGATAGGGGAGGGAGAGGGAG |
| HERVFH21 | BPC5 | 864 | 893 | - | -45.88 | GGGGAGAGGAGGGGAGAAAGGTAGAGCCGG |
| HERVFH21 | BPC5 | 436 | 465 | - | -47.32 | TGAATGGAGGAGGGGGGGGTAGAGGAAGAA |
| HERVFH21 | BPC5 | 405 | 434 | - | -48.16 | AGACTGCCGGTGACAAGGACGGCGGGAGAG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
