HERVFH21
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000182 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Simiiformes |
| Length | 6529 |
| Kimura value | 12.49 |
| Tau index | 0.8642 |
| Description | Internal region of ERV1 endogenous retrovirus, HERVFH21 subfamily |
| Comment | HERVFH21 is the internal region of HERVH-related endogenous retrovirus, and is flanked by LTR21 long terminal repeats, and has 5 bp TSDs. It has a PBS site similar to Phe tRNA binding site in intracisternal A-particles from mouse and hamster genomes. |
| Sequence |
TTCTGGTGCCGAAACCCGGGAAGGGGATAGGCTCTGGCCGGGANTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCCCTCCCCTATCACCCCTCTCCCGGCCGANCTCCCCCTTCCCGAACCTGCCGAAGACCCGGAGGATCTCCTAGACCCTCCCATTGCTGGCGACCNCATCCANCACCAGGGCCTCCGCAGGGGTGAGTNAAAAGAGACTCTTGCCATTCCCCGGAACCCTTGACCGTCCGTCTCTCCNTTCCCGAAAGACCCAGCGCTGGGCCAAGGGCTTCCTCCCGCCTCCGGGCCTCCAGGCGNCCCTCGGTTCCTCCGTTTCAGGGACGCCTGACNCGGCGGTTACCTCCCCTATTCCGGACAAGNCCCGCGGGACAGGGGACGCCCTCTCCCGCCGTCCTTGTCACCGGCAGTCTCTTCTTCCTCTACCCCCCCCTCCTCCATTCACCATGGGAGCCTCTCAGTCTACTCCCTCNAAGACNNCCCCCCTGGGTGTCTCCTCCGCAACCTCAACGCCCTCGGCCTCCGTTCAGAAATCCGNCCNAAAAGGCTTATCTTTTTCAACATNCTCAGACCTAGATAATTTTTGCCATCGAAATGGGAAATGGTCTGAGGTGCCTTACGTCCAGGCATTTTTCACACTTCGTNCCCNCCCTNCCCTCTGTCAGTCCCGTTCCACTTCCCAAATCCTCCTCNCCCNCTCCNANCCTGNCTCGCCTCCTANCCCCCNCCCCACAGCCCCAGCTGACGATTCCTCTTCCTTTGACCCNNCCGACTTTCCCCTTCCCCGNCGGCATCACGNTCCTCCGCCAGAGCGTCCCGATCCTCCACCGTATGCCCCCGCTCCGGCTCTACCTTTCTCCCCTCCTCTCCCCAACCACCCNGCTTCTGACTCTGGGTCCTCTCCNTCTCCACCCCTCACCCGCTCTCNGGCCCAACNTGCCCAGCAACCAGCTCCCCTGCTTCCTCTTAGAGAGGTGGCTGGAGCTGAAGGCATAGTCAGGGTACATGTNCCTTTTTCTCTATCAGACCTTTCCCAAATCAGCCAGCGTTTAGGCTCTTTCTCATCAGACCCCGNCACTTATATACAGGAATTCCAATATCTAACTCNGTCCTACAATTTAACCTGGAGTGACTTAAATGTCATCCTGACTTCTACCCTCTCCCCAGATGAACGGGAAAGATTTNTCTCNTAGCCCAATCTCACGCTGATAACCTTCATGAGCCAGACCCCANNAAGGCNNTAGAGGCCGCCGCAGTTCCCCGAGAGGANCCCCNNCGGGANTACCAGCCCGCAGACCCCGGCCGGGCATCTCGAGATTACATGGTTTCCTGCCTAGTTGAAGGGCTTAAAAAGGCAGCNTACAAAGCTGTTAATTATGACAAGCTTAAAGAAACTACCCAAGGTAAAGACGAAAACCCAGCCCAGTTCATGGCCCGCTTNGCAGCGACCCTNAGACGCTNTACCGCCCTAGACCCNGANGGNCCGGAAGGCCGCCTTATTCTTAATATGCATTTTATCACCCAGTCCGCTCCCGACATTAGGAAAAAGCTTCAAAAATTAGANTCCGGCCCTCAAACCCCACAACAGGACTTAATCAACCTCGCCTTCAAGGTGTNCAATAATAGNGANGAGGNAAGNNAGGCAGCAACANGCAGAGTTNCAANTACTTGCCTCCGCTGTNAGANGCCCTNCAGNCCACGGGACGCAGCTCCACACGGAAGCCTCCTAGCAGTTCACCTCCNCCNGGANCTTGCTTCAAGTGCGGCAANGAAGGCCACTGGGCCAAGGAATGCCCCAGCCCAGGNATTCCTCCTAAGCCGTGCCCCTCTGTGCGGGACCCCACTGGAAGTCGGACTGTNANTNGCCCCCGCAAGGACCGCCCCCANCCCTTCCCGAGCCGGCCGAAACCTCCTTCCCAGATCTCCTCGGCTTAGCGGCTGAAGACTGACGCTGCCCNGGAACGGACGCCCCGGNAGCTACCATCACNGCATCCGAGCTTCGGGTAACTCTTACAGTGGAGGGTAAGTCNGTCCCCTTNNTTTNATCGATACGGGGGCTACCCACTCCGCATTACCTTCTTTTCAAGGGCCCGCTCCGTCCTCCCNNGTCTCTGTTGTGGGTATTGACGGCCAGGCTTCNAAACCCCTTAAAACTCCCCNACTCTGGTGCCACTTGGACAACATTNCTTTTACGCACTCTTTTTTAGTTATCCCCACCTGCCCAGCTCCCTTATTAGGCCGAGACATTTTANCNAAATTNTCCGCTTCCCNTGTNTTCCTGGCNACTACAGCCACANTCCCTCCCGCCCCTCTCCGCCAGTCCAGCCCCTNACCCCTCTCCCCGGCATCCNCTCCCCACCTCCCNCGTTAACCCACAAGTATGGGACACCTCTACTCCCTCCCTGGCGACCGATCACGACCCCATTACCATCCCATTAAAAAATCCCCCTAACCCGCCCAACGNTCNCCAATATCCCATCCCACNAGCACGCTTAAAAGGATTAAAGCCTGTTATCANCNNGCTCTGCTCACGNCGTCTTCTAAAACCTACAAACTCTCCTTACAATTCCCCCATTCTACCTGTCCAAAAACCGGACAAGTCTTACAGGTTAGTTCAGGATCTNCGCCTTATCAACCAAATTGTCTTGCCTATCCACCCCGTGGTGCCNAACCCGTATACTCTCCTNTCNCTCATNCCTTCCTCCACAACCCACTATTCCGTTCTTGACCTNAAAGATGCTTTCTTCACTATTCCCCTGCACCCCTCNTCCCAGCCTCTCTTTGCTTTCACCTGGACTGACCCTGACACCCATCAGTCCCAGCAGCTTACCTGGGCTGTACTGCCGCAAGGCTTCAGGGACAGCCCTCATTACTTCGGCCAAGCTCTTTCTCATGATCTTACTTCCTTNNATCCGTCCCCCNGCCACCTTATTCAATATATTGATGACCTTCTNCTTTGTAGCCCCTCCTTNGAANNCTCCCAAACNCACACTNCCGCCCTTCTAAACTTCTTTNCTAANAAAGGATATCGGGTATCCCCTCCAAAGCNCAAATTTCTNCCTCCATCGTTACCTACCTCGGCATNNAACTCTTCNTNAAAACACGNGCTNTGACCCCTGCCCGAGCGGCCTTAATNGATAANTAATCTACCCCANCCCCTTCTAAAAACGAAATCCTTTCCTTCCTAGGCATGGTTGGATACTTTCGNCTTTGGATACCCGGTTTTGCCATCCTAACNAAACCATTATATAAACTCGCAAAAGGCCCCCTCGATGANCCCCTAAACCCCTCNCNTAACCTACTCCCCANCTTCCGTNNACTCCAAACAGCTCTNGNNACCGCNCCCGCTCTANCCCTNCCCGACNTCTCCCAACCCTTCTCNCTNCACACAGCCGAAGNCCGAGGNNTNGCNCTCGGNGTCTTAGGACAACAGAAGGGAANTCCTCCNTCCTTTGCCCCTGTAGCCTTTCTGTCCAAACAACTTGACCTTACTGTTTTAGGCTGGCCNTCATGTCTCCGNGCGNCGGCNGCNGCCGCCACTTTTAGCCCTCGAAATCACGAAACTAACGCTCAACTNNNNCGNCACTCTCTACAGTTCTCATAACTTCCAAAATCTATTTTCCTCCCGAGCATTANGCTCCCTTTCTGCTCCCCGGCTCCNNTTNCTCTATNCNCTCTTTGTTGAGTCTCCCAAATTCAGTCTTGCCAANAGTGCTCCCTTCAATCCGGCCTCCTTATTCCCGATATCCNCCTCCCCNCCTACCCATTCNTGCACTGATATCCTGATCCACCTGCATTCACNCTTTCCCCATATTTCCTTCTTTCCTGTTCCTCACCCCGNTGATCAACTGTTTATTGATGGCAGTTCCACCAGGCCTAATCGCTCACCCAAAGNNGCAGGCTATGCTATTGTCTTCCACATCTANNTCATTGAGGCTACNNCCCTGCCTCCANNNACTACCTCTCAGCAAGCCGAACTCATTGCCTNTAACTCGAGCCCTCACTCTTGCAAAAGGACTACGCGTCAATATTTATACTGACTCTAAATATGCCTTCCATATCCTGCACCACCATGCTGTTATATGGGCNGAAAGAGGTTTCCTCACTACGCAAGGGTCCTCCATCATTAATGCCTCCNNTTAATTAAAAACTCCTTNAGGCCGCTTTACTTCCAAAGGAAGCTGGAGTCATTCACTGCAAGGGCCATCAAANAGGCTCAGANNNNCCNNTGANNCGNCGNATCAATCTCAAGAGGNAACANNAANGCCGATAAGGCAGCAAAAAACAGNACCTCAAAAGGGATCAGANNTGAAATCTCAAGAGGNAACGNNNANGCCGATGAGGCAGCAAAAGAAGCCTCCCTTTCTTCTGTCCCTGCCTCTCTCCTCCTCATTACCCCNGCANTCCNACCCAAGTACTCCCCCACTNAGAAANNGCTTCGCTACTACAGCAAGGAGCCTCCCTCCAAGGGGACTGGATAGTCAAAGATCAAAAGCTCNTCCTCCCCCAAGAGCAAGCCAANNNNATTCTGACATCNCTTCACCAACCCTTCCATGTNGGTGCGCGCCCCCNGTACCTGCCCCTTCGCCCTCATTTCTCCTCCCCCCATCTATTCACCTCACTAAAGGACATAACCTCNAACTGTCNCATNTGCTNTGCTACTTCCTCCCAAGGGGCCCTCCGCTCTCCCCCCATCCCTACACATCAGCTCAGAGGANCGCTCCCAGGGNAGGACTGGCAAATNGACTTCACCCACATGCCTCCCGTCAAGAAAACAAAATATCTTCTTANTCTNGTAGACACTTTCNCTGGNTGGGTAGAGGCNTTTCCCACNNCNTCNGAGAAGGCCGCNGNAGTCTCCCAAATTCTCGTAACAGANATNATCCCTNGGTTTGGCCTCCCCANCTCCATACAGTCNGACAACGGNCCNTAGCTTCATCNNCCAAATCACCCAACCGGTTTCTCAGNCCCTTGGTATTCAGTGGCGCCTCCATATCCCNTACCGNCCCCAGTCNTCAGGAAAAGTCGAAAGGGCAAATGGNATTCTNAAAACNCAGTTNACCAAACTCACCCTCGAAGTCNAAAAACCNTGGACCTCCCTTTTACCCATAGCNCTGGCCCGCATCAGAGCCAGTCCAAAAGCACCCTCCTTCCTCAGTCCATTTGAGTTAATGTATGGACGCCCTTTCCTCTTACAAAACAGGCCCCCTCCTAACTCTCAGTTAGGAGAATACCTCCCAACACTCTCCCTCATCCGCCATCTCCTCCGCGAACAAGCNGACCAGGNCCCTCCCAAAACCCCACGAAGGCCCTTGACACCTCCCACCTCCTTAACAAAAATTCAGGGTACTGCAACGGCCGACACCTCCCCTGTTTATCCCTCTTCCCTTGGCTCCCCTCTCCGTGCACCATCCCTGCCCNNNACCCACCACCCGCGACTGTCTCCTTATCCCANCGTTCAACAACACTCCCACANGNNTCTTAGTGGACACAAAACGCTTCCTCCTACACTGGGAAAAAAAAAAANNAACNCAAAGAGCCNCCCAGCCTAANCCAAACACCCCCTTACAACCACTCNCCGCAGCGGCCCTAGCCGGCACCCTAGGAGCATGGATGCACGAGGACAACAAAATTNTACACCTTTTTAGCATACACAACCAGTTCTGCCTACCNAGCCAAGGCATATTCTTCCTATGCGGCACCTCNACCTATNTCTGCCTCCCCNCCAACTGGACAGGCACCTNCGCACCCTGGTTTTCCTCAGCCCNAAAATCGACGTTGCCCCAGGAGACCAACCCCTACCAATCCCNGTTAANACCCANATCCGACACCGCCGNGCCATACAGCTCATACCCCTNCTAGTAGGCCTAGGAATNACNGCAGNAGTNGGAACCGGAGTNGCGGGATTNGCNACCTCCCTNTCCTATTACCAATCCCTCTCCAAAGACCTTACGGANAGCTTGGAAGACATNGCCAANTCCATTNCNACCCTCCAANCNCAAATAGACTCTTAGCAGCAGTCGCCCTNCAAAACCGCAGAGGCCTNGACCTNCTCACCGCCGAAAAAGGAGGNCTCTGCNTCTTTCTAGATGAANAGTGCTGCTTTTATCTCAACCAGTCAGGCTTAGTNCAAGATGCNGTCAAAAAACTNAAAGACCGAGCNCAAAAAATCAAAGAAAACGTCCTCTGCTGGCCCNCNTGGCCCTCNTGGTCCCTCAGCNCCTGGGCTCCCTGGCTACTGCCCCTCCTNGGCCCNGCCATAACCNTTCTTCTCCTTCTAGCNTTCGGNCCCTGCCTCNTACGCCTCCTCACCCAGTTTTTACAGGACCGTATCAGAGCCTTCACCCACGGAACAATACAAGATATGATGCTGCTCCAGGAATACCGACGGCTCCAAGAACGGCAGTCCCTACCNTCCAGCCTTTCCCCNCAACCGCCGCCCCTTCCCAGCNNGAAGCAGCCAGACGACAACGGCGCCCCTCTTCTATTACCTATTAAAAGGCTGGAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| HERVFH21 | BPC1 | 55 | 78 | - | 43.52 | GAGAGAGAGAGAGAGAGAGAGAGA |
| HERVFH21 | BPC1 | 57 | 80 | - | 43.52 | GAGAGAGAGAGAGAGAGAGAGAGA |
| HERVFH21 | BPC5 | 60 | 89 | - | 41.80 | AGGGAGAGGGAGAGAGAGAGAGAGAGAGAG |
| HERVFH21 | BPC1 | 63 | 86 | - | 40.12 | GAGAGGGAGAGAGAGAGAGAGAGA |
| HERVFH21 | BPC1 | 47 | 70 | - | 40.00 | GAGAGAGAGAGAGAGAGAGAGAGT |
| HERVFH21 | BPC1 | 45 | 68 | - | 39.83 | GAGAGAGAGAGAGAGAGAGAGTGA |
| HERVFH21 | BPC1 | 59 | 82 | - | 39.74 | GGGAGAGAGAGAGAGAGAGAGAGA |
| HERVFH21 | BPC1 | 61 | 84 | - | 39.00 | GAGGGAGAGAGAGAGAGAGAGAGA |
| HERVFH21 | BPC6 | 48 | 68 | + | 38.66 | CTCTCTCTCTCTCTCTCTCTC |
| HERVFH21 | BPC6 | 50 | 70 | + | 38.66 | CTCTCTCTCTCTCTCTCTCTC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
