HERVFH19
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000181 |
|---|---|
| TE superfamily | ERV1 |
| TE order | LTR |
| Species | Haplorrhini |
| Length | 7719 |
| Kimura value | 8.51 |
| Tau index | 0.9535 |
| Description | Internal region of ERV1 endogenous retrovirus, HERVFH19 subfamily |
| Comment | Associated long terminal repeat is LTR19. |
| Sequence |
TTTGGTGCCGAAACCCGGGACGGGTGTTGGGGGCAGAGGCTCTCTTGCAACCCAGGAAGCAGTGGGCAGCGGCAGCTCATCCTGAGTTAACTCCTGGATCCTGAGGGTCTCTGGCCACCCGCCCCGTCTTTTCTCTCACTTCACTTTTCGAGCGATTTGCGTGAGGAGGACAACTGACCTGAAGGGGACTGCGAGGCTCGGGCCGGGGCTACTCCCCGGTGGGCTCTCAAAACCCTCAGGTCTCAGGAATCCACCTCCGACCGCCCGCAATGGGTATTTCGCTCTCTANCCCTCTCTCCCTCTTCCTCCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGTTCCTCGTGCGGCTCCAGTCCGGGAGGCCCTTTGCCGATTCCAACCGGAACATCCAACATCGGACACTAATCCAGCCGNCTGGTAAGATCTGCCTTCCCCTGGCTTTCTCGCGGTACCCGGGAAAGTCAGGTCTGCCGTCCNGGTCCTCGGAGGACCAGCGGGACTAAGCTAGAGGAAATCTTGGGGACGCCCAGTTTCTTCTCAGCTTAACCGTCCTCTTTAGAAAGAGGATTCCGGGTCTCTGTCTTTCGTCTGGGGACGCCTAGAACAAAAACAGACACCCTCGGCTTCCTCTTACCAGTCCACATGGGTGCCAAACAATCCCACATCCCTACGTCCTCCCCACTGGGCTGTCTCCTTCACAACCTCGCCAAACTTGGCTTACGGGGGAGCCTAAAGCCAAAGCATTTAGTTTTTTATTGCAACACGGCCTGGCCCCAATACAAATTAGATAACGACAGCCGATGGCCCAAAAACGGCACCTTTGACTTTCAAATTCTCAGGGACCTTGACAACTTTATAACCAGGAACGGCAAATGGCAAGAGGTTCCCTATATTCAGGCTTTCTTCTACCTTAAATCCCGACCCTCCCTATGTCAAGCTTGCACCCCTCATGAAATCCTTCTTCTTAATGAAAACCCTCCCCGGGTCTCCCCTTCCTCCGNANCCCNTNCNNCCGNNNNNNNNNNCGNNAAAACCCCTTCCTCCGAAACCCCTTTTGACCCTGCAGATGAACCCCCTCCGTATTCTCAACCCCCTGCATCCGCTCCTCGCCCGNCCGAACCCTCCGCCCCGNCGGCCCCTCCTGCCCCCAAGCCTTTAGCCCCAAACCCCGCCCCTCCTCCTTCTCCACCNGTTACCCGTTCAAAAACTACCAGTCAAACCACCTCTGCCATTCTCCCTCTCCGGGAAGTGGCTGGGGTTGAAGGCATTGCTCGCGTTCATGTCCCTTTCTCCACGTCTGATTTGTCGCAGATCAAACAGCACCTGGGATCTTTCTCTGAAAATCCCTCTCGTTATCGCAGGGAATTCCTGCACATAACCCAATCCTTTAATTTAACTTGGCATGACATTTATATAATTCTAACCTCCACCCTCACTCCTGATGAAAAGGAGCGCATCTGGCGTTCAGCTGAAGCCCACGCAGATGAACTCCATAATCAAGCCCCTATACAAAATCCAGTGGCCAACGATGCAGTCCCCCGTAGAGACCCAGATTGGACTTACCAACAGGGAGACANTGGCATCAGGCGAAGAGACCACGTGATTACCTGTCCCCTCGCGGGCATGGACAAAAATGCCCATAAGGCAGTTAATTATGAAAAACTCAGAGAAATTACACAAGAGCCCCAGGAAAATCCTGCCCTTTTCTTATCACGCCTCACTGAAGCTATGCTAAAATATACCAATTTGGACCCAGAATCTAGAGAAGGTCAAACTTTTCTCCACCTCCAATTTGTTTCCCAATCCGCCCCAGATATCCAGAAAAAATTATAAAAATTAGAGGAGGGTCCCCAGACATCTCGGCGGGACCTCCTAAATGCGGCCTTCCGTGTCTTTAACAACAGAGACGAGGAACAAAAAATTCAAAAAGACAAACATCTCCGTTTAAAATACCAGATGCTCGCCTCTGCTGTCCAAAAGTCAGTTACACAAAAGCCTCCCGATAACCCGAAAGGAAACTCCCCCACCTCTCCGGGAGTCTGTTTCCGATGTGGCAACCCTGGACACTGGGCAAAGGCTTGTCCTAACCCCCGGCCCCCCACCAAACCGTGCCCAACTTGCGGTCTTTGGGGACACTGGAAAATGGACTGCCCCCAACGGGGACACCTTCCCCGTTCGGGTGCGGCTCATAATGAAGCCCCCTGACCATCACAGGAGGAAATCTCTTCACTGCTGGCGCTGACAACGGAGGACTGAGGGTGCCCGGGATCCTTCGCCCCCACGTCCAGTGAGTCCACGGAACCCAGGGTAATTGGGACGGTATCCGGTAAGATTATTTCCTTTCTTTTGGATACTGGGGCGAGCCTATCGGTATTAACTGAATATCAAGGCCCATTAGAACGTTCATCCGTTTCTGTTGTTGGCATGAAGGGCATACAAGAAACCCCATACAAAACACCGCCNCTATACTGCTCATTTCAGGGAGTCACCTTCACTCACTCTTTCTTGGTCATTCCTCATTGTCCCACTCCTTTACTAGGAAGGGACATCCTACACAAACTAGGGGGAATCATTCATTTATCGGCCCTACACCAAAGCCACCCTTATTTATTATTATGTCAAGAACAGAACCCCTCCTCAGACACTCNACATCAAACAGACTTAAATCCCAAATTCCTCAGCCAGGTAAATCCCATAGTATGGAACACCGACTCCCCCATAATAGCTACCCACCATTCTCCAATTCAAATTTCACTGAAGGATCCTAAGCGCTATATAGTGGTCCCACAATATCCCCTCAACCCTAATGGATTACGGGGACTCAAGCCCATCATCTCCCGACTTTTGGCTGCCAATATTTTAATCCCCACCCATTCTCCCCACAATACTCCTATTCTCCCAATTAAAAAACCGGATGGCTCCTATAGACTGGTTCAGGATTTGCGACAAATCAACTCCGCTATTGTTCCTGTTTGTCCTGTTGTCCCAAACCCCTACACCCTCCTATCGCGAATTCCTCCCAACACTAGCCATTTCTCTGTATTAGACCTCAAAGATGCCTTTTTTACTATCCCTCTACATCCCTCCTCTCAAAACCTTTTTGCTTTCACTTGGACCGACCCTGACACAGGCTACTCCCAACAACTCACCTGGACTGTCCTCCCCCAGGGGTTTAGGGACAGCCCTCACTATTTCGGTCAGGCACTTCAATTGGACCTCTCCCAACTACCTCTACAACCTAGCATTTTGCTTCAATATGTGGACGATTTACTCCTTTGCAGCCCCTCTCTAGAACATTGTATTCAACACACCACCAAGCTTTTAAATTTTTTGGCTGAATGCGGGTACCGGGTATCCAAAAGGAAGGCCCAATTAACCTCTCCAAAAGTTTCATACCTAGGATTAATCATAACTCCAAATACCCGAGAAATTCCGCCGGCACGAAAGCAAGGCGTTCAACAAATCCCATTTCCTAAAACAAAAAGGGACTTACTTTCTTTCCTCGGATTAGTGGGATATTTCCGATTATGGATAGCAAATTTTGCCATTATCGCTAAACCCCTTTATGAACACACAAAAGGAAATCTTGACCAACCACTCACTCCCACCCCAGACCTTTATCATGCTTTCTCTCACCTAAAACGTGCCTTATTACAGGCCCCCGCTTTAGGCCTTCCAAACCCCCTAAGACCTTTTCATCTATATTTACACAGTTCTCATAATCAGGCCCTTGGACTATTAGCCCAACCCATGGGAGACTCCCTCCAACCAGTGGCATATTTTTCAAAACAACTAGACCCCATTTACAAAANCTGGCCCCTTTGCTTAAAAATTTTGGCCACAGCCTCTCTAATTATCCCTGAGGCACAAAAACTCACGTTCTACGAACCCCTTCAGGTATTTTCTTCTCACAGTCTACAAGATATGCTCAGCCATAAGGCGCTCACCTCCATCTCATCCTCTCGCATGCAAGCCCTACATTCAACTCTCCTTCAACCCTCTATCTCTCTTCATAGATGCTCCCCTCCTAATCCCGCCACTCTTTTACCTTCAACACCAATTTTGGACCCCGACCAACACTCATGCTCTGATCTAATTGAAAGTTCTCTCACCATGTTTCACCACCTTACTTCCACTCACATAAAGGGAGCCCCAGATTGGTTTATAGATGGCAGCGCATCAAAAAACCCTCCCCTCCAAGCAGGATATGCCATCATTGAGGGATATCATGATGATACCCACTCTCTCCCACCTAGAAGAGTCGTAGAGGCTGCCCCCTTGCCTTTGGGCACATCCTCCCAACAAGCAGAATTAGTTGCCCTAATAAGAGCACTAACCCTAGCAAAAAACACACAAGTTAATATATACACCGATTCTAAATATGCCTATAACATCATCCATTCCAATGCCCAAATTTGGAGCGAGCGGGGCTATCTCACGGCTAAGGGAACCCCTATCATTAATGGAAAACTAATCCATCATCTACTAAAGGCAGCTCTACTTCCAGAAAAGGTTGCAGTTATCCATTGCAAAGGACATCAATCAGACAAAAGCCACATTTCTTTAGGGAACCGTGAGGCTGACTATTGGGCAAAACACGCCTCAACCAATCACCCAATTCCCCAATACCTATTTCCCCTCATACAACATATCCCCTCCTTTTATCCAGAACACCAAACACAACAACTAATCACGGCGGGGGCACAATTCAAACCCCCATACTGGTTCATACAAAACAAATTAGTCCTACCTGACCCTGAAAAAACAACTCTTTTACGGGACATTCACAACCTCTTCCACACTAGCCATTCCCCTCTACAACATTTCTTAAGTTCCCATATACACATAACCCCAGATATAAAGGAACAGTTAAAAGCCATTTCCCATCAATGCTCTATTTGCCAGAAAGCTTCACCCCACTCCAACACTAGACCCCCTTCTTTCCCAACCCATCAAGCCAGGGGACACCTTCCAGGACAGGACTGGCAAATTGATTTTACCCATATGCCCCCAGTAAAAAAGGTTCGATTTCTTTTAGTTCTGGTTGATACCTTTTCGGGATGGGTCGAGGCTTTTCCCACAACCAACAAACGAGCTTCTACTGTCACCTCCAAATTAATAACAGAAATCATCCCCAGGTTCGGGGTGCCTCTTTCTTTTCAATCTGATAATGGTCCTGAATTCATTTCTCAAATTACTCAAACACTTGCACAAGCCCTACAAATCACCTGGAAGCTACACATCCCCTATCGACCTCAATCTTCAGGAAAGGTTGAAAAAATGAATGGCATTCTAAAAAACACCCTCACCAGGTACTCACTCCAAACACATAAAGACTGGGTTACACTTTTGCCTTTGGCCCTTCTAAAAATTCGGGCGCTCCCACGTAAACCTTTAATGCTCAGCCCCTTTGAACTCATGTATGGGAGACCACTCGCCCCTTTTGTTCCACCTCAGGGTCAAGCCCCACCTCTACCAACCCCTCTCGTTTCCCCTCTTCTACATACCATCCGCCATTTCATTTGGGAATATGCTGACAAATACCTGCCACAACCCGTCGCCGACTCCTCTAATCCCTTCCTACAGCCAGGAGACTGGGTTCTGGTAAAAGATCCCAGTCCTACCCCCAATTCCCCCCTCACACCTAAATGGAAGGGACCTTACCAGATCATCCTTACTACACCCACGGCAGCAAAACTCCAGGGACTCCCCAGCTGGTTTCATTATACTTCTCTCAAGAAAACAGACTTCCCTTCACCACATACCCAAACAACCAAATCTAAAACCCCTTCAGCCTTCTCTTGTGTCTCCACAGGACCCACTTCCCTTCGCCTCACCCGAATCCCGGAGGAAAAGGAAGAGAAATCCACATAAGCCGCTTATGTCTCTTTCTCTCCCAAACTTTCATCGCTTCCTAACCAACCTTGTTACAGACCTTCAGTGGTACCCTTACGAAACTCCCATTATACATCCTGATCAGCTCCTTACTGTTCTATGGGACCTACGGCTTCAAGGAACTTTCCAGGACTTTACTCCTACCCAAATAACTTTTTTCTCTTTTTGCTTGTTTCTTTCAATATAAATTCCCTAATCACATCAACCTCACCAATACAACCACTCCTCACTGCTCTCAAACTAGAACGCTCTATAAACCTTACACAATCCCTCTTGCTGCAAGCTAACTCTTCCTTTGCTCCGGAATGCTGGATGTGCTTATCGCTGTCTTCCTCAGCTTACACAGCCCTTCCTACACCCCTTCATGACCTTTTAACAGGAAACATAACCCTAATCTATAAACTCCAAAAAGGAGCTTCCTTTTTTGAAAGAGCTGACACCCTGGTCGGCGATTATCCCACTTCCAGGGCCAATCAGGCCAACAAATTATTTCAAACCTATTACAACTCCCTACAACGCCTTAAGCCCCAAGGCCCTCCCATTGAAGGGCCCATAACTAAACACACCCCCCTTTTACAACAAGCCTCACTTTGCTTTTCAGCCTCTGAGGGAAATTTCCCTGTAGGGTCCTTAACACCTAACCAATGCAACCGCACTATCATTGTTAAACACCCCTCTGACCATCAAACTAACCGAGTTGACTACCAAGTATCACCTGAAGCGAACGGAGCATTTCTGCAACCGGCTCGTTTTACAGCCTCTCCCTCAACCAATGCCTCCGGCCTAACCTGTGCTGCCCCTAGTGCCCACCTTTTTCCATGGCTCAATATCAATGGTGCAACATCCGACCGCATTAAATGTGTAAAAAATAACTCTTCCTATATCTCTACTATAGTGGGTGTCTCCCTGGCCTCCTCCTTGTCCACCTGGAGTAATGAACCACAGGAAAGAAAAAACACCCCATCTTTAATTCACTTGTTTTCTTTCCATATCTCCGCCTGTATTTACGACAAAGGCTTGTTCTTTTTGTGTGGCACCAACACATATCTTTGTCTCCCCACCAACCGGACCGGAACCTGTACCCTAGTTTATCTTTCTCCCTCCATTGGACTAGTTCCTCCTAATCAACCTTTGCCCATTCCATCCGTCCAATATGTTAGGAAAAGGAGGGCCATCCACGTCATTCCTTTAATGGCTGCCTTAGGTATAACCTCCGGACTTGGATTGGGAGCAGGCGGATTGGCCACCTCCTTAACATACTTTAAAGCTCTTTCAACAGAACTACAGGGTTCTTTAGAAGATATAGCCCGAAGCCTTATAAGAGTCCAAGACCAACTAGACTCCTCGGCTGGAGCAGTCCTCCAAAACAGACGGGGACTAGATCTTATAACGGCTGAAAAAGGGGGCCTCTGCCTCTCATTGGGTGAGGAATGTTGCTTCTATCTCAACCAATCGGGCCTAGTAAGAGACGCTGCTGAAAAACTTAAAGAAAGGGCTAAAAAGCTAAGGGAATACCAAAACAACCAAATAGATTCTTGGTTTGGGAACAAAATCATAACATGGGTCATCCCATTCCTGGGCCCTCTCCTAATAATATGCCTAGGACTAATGTTCTTACCCTGCCTAATTAACCTTTTTCAAAGATTTTTAACCGACAGAATCATGGCCATTTCGCAGACAACTACCCAAAAACATCTACAGACGGCGTTGCTCCTGCAGTCAATCCGAGACCAAAAAACTCTCCGCCCCCCCCTCAGCAGGAAGTAGCCAGAAAGAACACGTCGCCCCTCGTCCTTTTNATAACTATAGGGTCTGGAT
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| HERVFH19 | BPC1 | 322 | 345 | - | 24.52 | GGAACGGAGAGAGAGAGAGAGAGA |
| HERVFH19 | BPC5 | 307 | 336 | - | 24.02 | AGAGAGAGAGAGAGAGAGAGAGAGAAGGGA |
| HERVFH19 | ZNF75A | 5077 | 5088 | + | 21.09 | GCTTTTCCCACA |
| HERVFH19 | RAMOSA1 | 310 | 323 | - | 20.46 | GAGAGAGAGAGAAG |
| HERVFH19 | RAMOSA1 | 328 | 341 | - | 19.87 | CGGAGAGAGAGAGA |
| HERVFH19 | BPC1 | 302 | 325 | - | 18.73 | GAGAGAGAGAGAGAAGGGAGGAAG |
| HERVFH19 | Clamp | 312 | 325 | - | 18.41 | GAGAGAGAGAGAGA |
| HERVFH19 | Clamp | 314 | 327 | - | 18.41 | GAGAGAGAGAGAGA |
| HERVFH19 | Clamp | 316 | 329 | - | 18.41 | GAGAGAGAGAGAGA |
| HERVFH19 | Clamp | 318 | 331 | - | 18.41 | GAGAGAGAGAGAGA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
