HERVFH19

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0000181
TE superfamily	ERV1
TE order	LTR
Species	Haplorrhini
Length	7719
Kimura value	8.51
Tau index	0.9535
Description	Internal region of ERV1 endogenous retrovirus, HERVFH19 subfamily
Comment	Associated long terminal repeat is LTR19.
Sequence	TTTGGTGCCGAAACCCGGGACGGGTGTTGGGGGCAGAGGCTCTCTTGCAACCCAGGAAGCAGTGGGCAGCGGCAGCTCATCCTGAGTTAACTCCTGGATCCTGAGGGTCTCTGGCCACCCGCCCCGTCTTTTCTCTCACTTCACTTTTCGAGCGATTTGCGTGAGGAGGACAACTGACCTGAAGGGGACTGCGAGGCTCGGGCCGGGGCTACTCCCCGGTGGGCTCTCAAAACCCTCAGGTCTCAGGAATCCACCTCCGACCGCCCGCAATGGGTATTTCGCTCTCTANCCCTCTCTCCCTCTTCCTCCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGTTCCTCGTGCGGCTCCAGTCCGGGAGGCCCTTTGCCGATTCCAACCGGAACATCCAACATCGGACACTAATCCAGCCGNCTGGTAAGATCTGCCTTCCCCTGGCTTTCTCGCGGTACCCGGGAAAGTCAGGTCTGCCGTCCNGGTCCTCGGAGGACCAGCGGGACTAAGCTAGAGGAAATCTTGGGGACGCCCAGTTTCTTCTCAGCTTAACCGTCCTCTTTAGAAAGAGGATTCCGGGTCTCTGTCTTTCGTCTGGGGACGCCTAGAACAAAAACAGACACCCTCGGCTTCCTCTTACCAGTCCACATGGGTGCCAAACAATCCCACATCCCTACGTCCTCCCCACTGGGCTGTCTCCTTCACAACCTCGCCAAACTTGGCTTACGGGGGAGCCTAAAGCCAAAGCATTTAGTTTTTTATTGCAACACGGCCTGGCCCCAATACAAATTAGATAACGACAGCCGATGGCCCAAAAACGGCACCTTTGACTTTCAAATTCTCAGGGACCTTGACAACTTTATAACCAGGAACGGCAAATGGCAAGAGGTTCCCTATATTCAGGCTTTCTTCTACCTTAAATCCCGACCCTCCCTATGTCAAGCTTGCACCCCTCATGAAATCCTTCTTCTTAATGAAAACCCTCCCCGGGTCTCCCCTTCCTCCGNANCCCNTNCNNCCGNNNNNNNNNNCGNNAAAACCCCTTCCTCCGAAACCCCTTTTGACCCTGCAGATGAACCCCCTCCGTATTCTCAACCCCCTGCATCCGCTCCTCGCCCGNCCGAACCCTCCGCCCCGNCGGCCCCTCCTGCCCCCAAGCCTTTAGCCCCAAACCCCGCCCCTCCTCCTTCTCCACCNGTTACCCGTTCAAAAACTACCAGTCAAACCACCTCTGCCATTCTCCCTCTCCGGGAAGTGGCTGGGGTTGAAGGCATTGCTCGCGTTCATGTCCCTTTCTCCACGTCTGATTTGTCGCAGATCAAACAGCACCTGGGATCTTTCTCTGAAAATCCCTCTCGTTATCGCAGGGAATTCCTGCACATAACCCAATCCTTTAATTTAACTTGGCATGACATTTATATAATTCTAACCTCCACCCTCACTCCTGATGAAAAGGAGCGCATCTGGCGTTCAGCTGAAGCCCACGCAGATGAACTCCATAATCAAGCCCCTATACAAAATCCAGTGGCCAACGATGCAGTCCCCCGTAGAGACCCAGATTGGACTTACCAACAGGGAGACANTGGCATCAGGCGAAGAGACCACGTGATTACCTGTCCCCTCGCGGGCATGGACAAAAATGCCCATAAGGCAGTTAATTATGAAAAACTCAGAGAAATTACACAAGAGCCCCAGGAAAATCCTGCCCTTTTCTTATCACGCCTCACTGAAGCTATGCTAAAATATACCAATTTGGACCCAGAATCTAGAGAAGGTCAAACTTTTCTCCACCTCCAATTTGTTTCCCAATCCGCCCCAGATATCCAGAAAAAATTATAAAAATTAGAGGAGGGTCCCCAGACATCTCGGCGGGACCTCCTAAATGCGGCCTTCCGTGTCTTTAACAACAGAGACGAGGAACAAAAAATTCAAAAAGACAAACATCTCCGTTTAAAATACCAGATGCTCGCCTCTGCTGTCCAAAAGTCAGTTACACAAAAGCCTCCCGATAACCCGAAAGGAAACTCCCCCACCTCTCCGGGAGTCTGTTTCCGATGTGGCAACCCTGGACACTGGGCAAAGGCTTGTCCTAACCCCCGGCCCCCCACCAAACCGTGCCCAACTTGCGGTCTTTGGGGACACTGGAAAATGGACTGCCCCCAACGGGGACACCTTCCCCGTTCGGGTGCGGCTCATAATGAAGCCCCCTGACCATCACAGGAGGAAATCTCTTCACTGCTGGCGCTGACAACGGAGGACTGAGGGTGCCCGGGATCCTTCGCCCCCACGTCCAGTGAGTCCACGGAACCCAGGGTAATTGGGACGGTATCCGGTAAGATTATTTCCTTTCTTTTGGATACTGGGGCGAGCCTATCGGTATTAACTGAATATCAAGGCCCATTAGAACGTTCATCCGTTTCTGTTGTTGGCATGAAGGGCATACAAGAAACCCCATACAAAACACCGCCNCTATACTGCTCATTTCAGGGAGTCACCTTCACTCACTCTTTCTTGGTCATTCCTCATTGTCCCACTCCTTTACTAGGAAGGGACATCCTACACAAACTAGGGGGAATCATTCATTTATCGGCCCTACACCAAAGCCACCCTTATTTATTATTATGTCAAGAACAGAACCCCTCCTCAGACACTCNACATCAAACAGACTTAAATCCCAAATTCCTCAGCCAGGTAAATCCCATAGTATGGAACACCGACTCCCCCATAATAGCTACCCACCATTCTCCAATTCAAATTTCACTGAAGGATCCTAAGCGCTATATAGTGGTCCCACAATATCCCCTCAACCCTAATGGATTACGGGGACTCAAGCCCATCATCTCCCGACTTTTGGCTGCCAATATTTTAATCCCCACCCATTCTCCCCACAATACTCCTATTCTCCCAATTAAAAAACCGGATGGCTCCTATAGACTGGTTCAGGATTTGCGACAAATCAACTCCGCTATTGTTCCTGTTTGTCCTGTTGTCCCAAACCCCTACACCCTCCTATCGCGAATTCCTCCCAACACTAGCCATTTCTCTGTATTAGACCTCAAAGATGCCTTTTTTACTATCCCTCTACATCCCTCCTCTCAAAACCTTTTTGCTTTCACTTGGACCGACCCTGACACAGGCTACTCCCAACAACTCACCTGGACTGTCCTCCCCCAGGGGTTTAGGGACAGCCCTCACTATTTCGGTCAGGCACTTCAATTGGACCTCTCCCAACTACCTCTACAACCTAGCATTTTGCTTCAATATGTGGACGATTTACTCCTTTGCAGCCCCTCTCTAGAACATTGTATTCAACACACCACCAAGCTTTTAAATTTTTTGGCTGAATGCGGGTACCGGGTATCCAAAAGGAAGGCCCAATTAACCTCTCCAAAAGTTTCATACCTAGGATTAATCATAACTCCAAATACCCGAGAAATTCCGCCGGCACGAAAGCAAGGCGTTCAACAAATCCCATTTCCTAAAACAAAAAGGGACTTACTTTCTTTCCTCGGATTAGTGGGATATTTCCGATTATGGATAGCAAATTTTGCCATTATCGCTAAACCCCTTTATGAACACACAAAAGGAAATCTTGACCAACCACTCACTCCCACCCCAGACCTTTATCATGCTTTCTCTCACCTAAAACGTGCCTTATTACAGGCCCCCGCTTTAGGCCTTCCAAACCCCCTAAGACCTTTTCATCTATATTTACACAGTTCTCATAATCAGGCCCTTGGACTATTAGCCCAACCCATGGGAGACTCCCTCCAACCAGTGGCATATTTTTCAAAACAACTAGACCCCATTTACAAAANCTGGCCCCTTTGCTTAAAAATTTTGGCCACAGCCTCTCTAATTATCCCTGAGGCACAAAAACTCACGTTCTACGAACCCCTTCAGGTATTTTCTTCTCACAGTCTACAAGATATGCTCAGCCATAAGGCGCTCACCTCCATCTCATCCTCTCGCATGCAAGCCCTACATTCAACTCTCCTTCAACCCTCTATCTCTCTTCATAGATGCTCCCCTCCTAATCCCGCCACTCTTTTACCTTCAACACCAATTTTGGACCCCGACCAACACTCATGCTCTGATCTAATTGAAAGTTCTCTCACCATGTTTCACCACCTTACTTCCACTCACATAAAGGGAGCCCCAGATTGGTTTATAGATGGCAGCGCATCAAAAAACCCTCCCCTCCAAGCAGGATATGCCATCATTGAGGGATATCATGATGATACCCACTCTCTCCCACCTAGAAGAGTCGTAGAGGCTGCCCCCTTGCCTTTGGGCACATCCTCCCAACAAGCAGAATTAGTTGCCCTAATAAGAGCACTAACCCTAGCAAAAAACACACAAGTTAATATATACACCGATTCTAAATATGCCTATAACATCATCCATTCCAATGCCCAAATTTGGAGCGAGCGGGGCTATCTCACGGCTAAGGGAACCCCTATCATTAATGGAAAACTAATCCATCATCTACTAAAGGCAGCTCTACTTCCAGAAAAGGTTGCAGTTATCCATTGCAAAGGACATCAATCAGACAAAAGCCACATTTCTTTAGGGAACCGTGAGGCTGACTATTGGGCAAAACACGCCTCAACCAATCACCCAATTCCCCAATACCTATTTCCCCTCATACAACATATCCCCTCCTTTTATCCAGAACACCAAACACAACAACTAATCACGGCGGGGGCACAATTCAAACCCCCATACTGGTTCATACAAAACAAATTAGTCCTACCTGACCCTGAAAAAACAACTCTTTTACGGGACATTCACAACCTCTTCCACACTAGCCATTCCCCTCTACAACATTTCTTAAGTTCCCATATACACATAACCCCAGATATAAAGGAACAGTTAAAAGCCATTTCCCATCAATGCTCTATTTGCCAGAAAGCTTCACCCCACTCCAACACTAGACCCCCTTCTTTCCCAACCCATCAAGCCAGGGGACACCTTCCAGGACAGGACTGGCAAATTGATTTTACCCATATGCCCCCAGTAAAAAAGGTTCGATTTCTTTTAGTTCTGGTTGATACCTTTTCGGGATGGGTCGAGGCTTTTCCCACAACCAACAAACGAGCTTCTACTGTCACCTCCAAATTAATAACAGAAATCATCCCCAGGTTCGGGGTGCCTCTTTCTTTTCAATCTGATAATGGTCCTGAATTCATTTCTCAAATTACTCAAACACTTGCACAAGCCCTACAAATCACCTGGAAGCTACACATCCCCTATCGACCTCAATCTTCAGGAAAGGTTGAAAAAATGAATGGCATTCTAAAAAACACCCTCACCAGGTACTCACTCCAAACACATAAAGACTGGGTTACACTTTTGCCTTTGGCCCTTCTAAAAATTCGGGCGCTCCCACGTAAACCTTTAATGCTCAGCCCCTTTGAACTCATGTATGGGAGACCACTCGCCCCTTTTGTTCCACCTCAGGGTCAAGCCCCACCTCTACCAACCCCTCTCGTTTCCCCTCTTCTACATACCATCCGCCATTTCATTTGGGAATATGCTGACAAATACCTGCCACAACCCGTCGCCGACTCCTCTAATCCCTTCCTACAGCCAGGAGACTGGGTTCTGGTAAAAGATCCCAGTCCTACCCCCAATTCCCCCCTCACACCTAAATGGAAGGGACCTTACCAGATCATCCTTACTACACCCACGGCAGCAAAACTCCAGGGACTCCCCAGCTGGTTTCATTATACTTCTCTCAAGAAAACAGACTTCCCTTCACCACATACCCAAACAACCAAATCTAAAACCCCTTCAGCCTTCTCTTGTGTCTCCACAGGACCCACTTCCCTTCGCCTCACCCGAATCCCGGAGGAAAAGGAAGAGAAATCCACATAAGCCGCTTATGTCTCTTTCTCTCCCAAACTTTCATCGCTTCCTAACCAACCTTGTTACAGACCTTCAGTGGTACCCTTACGAAACTCCCATTATACATCCTGATCAGCTCCTTACTGTTCTATGGGACCTACGGCTTCAAGGAACTTTCCAGGACTTTACTCCTACCCAAATAACTTTTTTCTCTTTTTGCTTGTTTCTTTCAATATAAATTCCCTAATCACATCAACCTCACCAATACAACCACTCCTCACTGCTCTCAAACTAGAACGCTCTATAAACCTTACACAATCCCTCTTGCTGCAAGCTAACTCTTCCTTTGCTCCGGAATGCTGGATGTGCTTATCGCTGTCTTCCTCAGCTTACACAGCCCTTCCTACACCCCTTCATGACCTTTTAACAGGAAACATAACCCTAATCTATAAACTCCAAAAAGGAGCTTCCTTTTTTGAAAGAGCTGACACCCTGGTCGGCGATTATCCCACTTCCAGGGCCAATCAGGCCAACAAATTATTTCAAACCTATTACAACTCCCTACAACGCCTTAAGCCCCAAGGCCCTCCCATTGAAGGGCCCATAACTAAACACACCCCCCTTTTACAACAAGCCTCACTTTGCTTTTCAGCCTCTGAGGGAAATTTCCCTGTAGGGTCCTTAACACCTAACCAATGCAACCGCACTATCATTGTTAAACACCCCTCTGACCATCAAACTAACCGAGTTGACTACCAAGTATCACCTGAAGCGAACGGAGCATTTCTGCAACCGGCTCGTTTTACAGCCTCTCCCTCAACCAATGCCTCCGGCCTAACCTGTGCTGCCCCTAGTGCCCACCTTTTTCCATGGCTCAATATCAATGGTGCAACATCCGACCGCATTAAATGTGTAAAAAATAACTCTTCCTATATCTCTACTATAGTGGGTGTCTCCCTGGCCTCCTCCTTGTCCACCTGGAGTAATGAACCACAGGAAAGAAAAAACACCCCATCTTTAATTCACTTGTTTTCTTTCCATATCTCCGCCTGTATTTACGACAAAGGCTTGTTCTTTTTGTGTGGCACCAACACATATCTTTGTCTCCCCACCAACCGGACCGGAACCTGTACCCTAGTTTATCTTTCTCCCTCCATTGGACTAGTTCCTCCTAATCAACCTTTGCCCATTCCATCCGTCCAATATGTTAGGAAAAGGAGGGCCATCCACGTCATTCCTTTAATGGCTGCCTTAGGTATAACCTCCGGACTTGGATTGGGAGCAGGCGGATTGGCCACCTCCTTAACATACTTTAAAGCTCTTTCAACAGAACTACAGGGTTCTTTAGAAGATATAGCCCGAAGCCTTATAAGAGTCCAAGACCAACTAGACTCCTCGGCTGGAGCAGTCCTCCAAAACAGACGGGGACTAGATCTTATAACGGCTGAAAAAGGGGGCCTCTGCCTCTCATTGGGTGAGGAATGTTGCTTCTATCTCAACCAATCGGGCCTAGTAAGAGACGCTGCTGAAAAACTTAAAGAAAGGGCTAAAAAGCTAAGGGAATACCAAAACAACCAAATAGATTCTTGGTTTGGGAACAAAATCATAACATGGGTCATCCCATTCCTGGGCCCTCTCCTAATAATATGCCTAGGACTAATGTTCTTACCCTGCCTAATTAACCTTTTTCAAAGATTTTTAACCGACAGAATCATGGCCATTTCGCAGACAACTACCCAAAAACATCTACAGACGGCGTTGCTCCTGCAGTCAATCCGAGACCAAAAAACTCTCCGCCCCCCCCTCAGCAGGAAGTAGCCAGAAAGAACACGTCGCCCCTCGTCCTTTTNATAACTATAGGGTCTGGAT

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
HERVFH19	BPC5	311	340	-	51.07	GGAGAGAGAGAGAGAGAGAGAGAGAGAGAA
HERVFH19	BPC1	312	335	-	43.52	GAGAGAGAGAGAGAGAGAGAGAGA
HERVFH19	BPC1	314	337	-	43.52	GAGAGAGAGAGAGAGAGAGAGAGA
HERVFH19	BPC1	316	339	-	43.52	GAGAGAGAGAGAGAGAGAGAGAGA
HERVFH19	BPC6	313	333	+	38.66	CTCTCTCTCTCTCTCTCTCTC
HERVFH19	BPC6	315	335	+	38.66	CTCTCTCTCTCTCTCTCTCTC
HERVFH19	BPC6	317	337	+	38.66	CTCTCTCTCTCTCTCTCTCTC
HERVFH19	BPC6	319	339	+	38.66	CTCTCTCTCTCTCTCTCTCTC
HERVFH19	BPC1	310	333	-	36.98	GAGAGAGAGAGAGAGAGAGAGAAG
HERVFH19	BPC6	311	331	+	36.12	TTCTCTCTCTCTCTCTCTCTC

1 2 3 4 ... 331

TFBS enrichment in GRCh38

Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

GTEx

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

TCGA

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).