HERVFH19
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000181 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Haplorrhini |
| Length | 7719 |
| Kimura value | 8.51 |
| Tau index | 0.9535 |
| Description | Internal region of ERV1 endogenous retrovirus, HERVFH19 subfamily |
| Comment | Associated long terminal repeat is LTR19. |
| Sequence |
TTTGGTGCCGAAACCCGGGACGGGTGTTGGGGGCAGAGGCTCTCTTGCAACCCAGGAAGCAGTGGGCAGCGGCAGCTCATCCTGAGTTAACTCCTGGATCCTGAGGGTCTCTGGCCACCCGCCCCGTCTTTTCTCTCACTTCACTTTTCGAGCGATTTGCGTGAGGAGGACAACTGACCTGAAGGGGACTGCGAGGCTCGGGCCGGGGCTACTCCCCGGTGGGCTCTCAAAACCCTCAGGTCTCAGGAATCCACCTCCGACCGCCCGCAATGGGTATTTCGCTCTCTANCCCTCTCTCCCTCTTCCTCCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGTTCCTCGTGCGGCTCCAGTCCGGGAGGCCCTTTGCCGATTCCAACCGGAACATCCAACATCGGACACTAATCCAGCCGNCTGGTAAGATCTGCCTTCCCCTGGCTTTCTCGCGGTACCCGGGAAAGTCAGGTCTGCCGTCCNGGTCCTCGGAGGACCAGCGGGACTAAGCTAGAGGAAATCTTGGGGACGCCCAGTTTCTTCTCAGCTTAACCGTCCTCTTTAGAAAGAGGATTCCGGGTCTCTGTCTTTCGTCTGGGGACGCCTAGAACAAAAACAGACACCCTCGGCTTCCTCTTACCAGTCCACATGGGTGCCAAACAATCCCACATCCCTACGTCCTCCCCACTGGGCTGTCTCCTTCACAACCTCGCCAAACTTGGCTTACGGGGGAGCCTAAAGCCAAAGCATTTAGTTTTTTATTGCAACACGGCCTGGCCCCAATACAAATTAGATAACGACAGCCGATGGCCCAAAAACGGCACCTTTGACTTTCAAATTCTCAGGGACCTTGACAACTTTATAACCAGGAACGGCAAATGGCAAGAGGTTCCCTATATTCAGGCTTTCTTCTACCTTAAATCCCGACCCTCCCTATGTCAAGCTTGCACCCCTCATGAAATCCTTCTTCTTAATGAAAACCCTCCCCGGGTCTCCCCTTCCTCCGNANCCCNTNCNNCCGNNNNNNNNNNCGNNAAAACCCCTTCCTCCGAAACCCCTTTTGACCCTGCAGATGAACCCCCTCCGTATTCTCAACCCCCTGCATCCGCTCCTCGCCCGNCCGAACCCTCCGCCCCGNCGGCCCCTCCTGCCCCCAAGCCTTTAGCCCCAAACCCCGCCCCTCCTCCTTCTCCACCNGTTACCCGTTCAAAAACTACCAGTCAAACCACCTCTGCCATTCTCCCTCTCCGGGAAGTGGCTGGGGTTGAAGGCATTGCTCGCGTTCATGTCCCTTTCTCCACGTCTGATTTGTCGCAGATCAAACAGCACCTGGGATCTTTCTCTGAAAATCCCTCTCGTTATCGCAGGGAATTCCTGCACATAACCCAATCCTTTAATTTAACTTGGCATGACATTTATATAATTCTAACCTCCACCCTCACTCCTGATGAAAAGGAGCGCATCTGGCGTTCAGCTGAAGCCCACGCAGATGAACTCCATAATCAAGCCCCTATACAAAATCCAGTGGCCAACGATGCAGTCCCCCGTAGAGACCCAGATTGGACTTACCAACAGGGAGACANTGGCATCAGGCGAAGAGACCACGTGATTACCTGTCCCCTCGCGGGCATGGACAAAAATGCCCATAAGGCAGTTAATTATGAAAAACTCAGAGAAATTACACAAGAGCCCCAGGAAAATCCTGCCCTTTTCTTATCACGCCTCACTGAAGCTATGCTAAAATATACCAATTTGGACCCAGAATCTAGAGAAGGTCAAACTTTTCTCCACCTCCAATTTGTTTCCCAATCCGCCCCAGATATCCAGAAAAAATTATAAAAATTAGAGGAGGGTCCCCAGACATCTCGGCGGGACCTCCTAAATGCGGCCTTCCGTGTCTTTAACAACAGAGACGAGGAACAAAAAATTCAAAAAGACAAACATCTCCGTTTAAAATACCAGATGCTCGCCTCTGCTGTCCAAAAGTCAGTTACACAAAAGCCTCCCGATAACCCGAAAGGAAACTCCCCCACCTCTCCGGGAGTCTGTTTCCGATGTGGCAACCCTGGACACTGGGCAAAGGCTTGTCCTAACCCCCGGCCCCCCACCAAACCGTGCCCAACTTGCGGTCTTTGGGGACACTGGAAAATGGACTGCCCCCAACGGGGACACCTTCCCCGTTCGGGTGCGGCTCATAATGAAGCCCCCTGACCATCACAGGAGGAAATCTCTTCACTGCTGGCGCTGACAACGGAGGACTGAGGGTGCCCGGGATCCTTCGCCCCCACGTCCAGTGAGTCCACGGAACCCAGGGTAATTGGGACGGTATCCGGTAAGATTATTTCCTTTCTTTTGGATACTGGGGCGAGCCTATCGGTATTAACTGAATATCAAGGCCCATTAGAACGTTCATCCGTTTCTGTTGTTGGCATGAAGGGCATACAAGAAACCCCATACAAAACACCGCCNCTATACTGCTCATTTCAGGGAGTCACCTTCACTCACTCTTTCTTGGTCATTCCTCATTGTCCCACTCCTTTACTAGGAAGGGACATCCTACACAAACTAGGGGGAATCATTCATTTATCGGCCCTACACCAAAGCCACCCTTATTTATTATTATGTCAAGAACAGAACCCCTCCTCAGACACTCNACATCAAACAGACTTAAATCCCAAATTCCTCAGCCAGGTAAATCCCATAGTATGGAACACCGACTCCCCCATAATAGCTACCCACCATTCTCCAATTCAAATTTCACTGAAGGATCCTAAGCGCTATATAGTGGTCCCACAATATCCCCTCAACCCTAATGGATTACGGGGACTCAAGCCCATCATCTCCCGACTTTTGGCTGCCAATATTTTAATCCCCACCCATTCTCCCCACAATACTCCTATTCTCCCAATTAAAAAACCGGATGGCTCCTATAGACTGGTTCAGGATTTGCGACAAATCAACTCCGCTATTGTTCCTGTTTGTCCTGTTGTCCCAAACCCCTACACCCTCCTATCGCGAATTCCTCCCAACACTAGCCATTTCTCTGTATTAGACCTCAAAGATGCCTTTTTTACTATCCCTCTACATCCCTCCTCTCAAAACCTTTTTGCTTTCACTTGGACCGACCCTGACACAGGCTACTCCCAACAACTCACCTGGACTGTCCTCCCCCAGGGGTTTAGGGACAGCCCTCACTATTTCGGTCAGGCACTTCAATTGGACCTCTCCCAACTACCTCTACAACCTAGCATTTTGCTTCAATATGTGGACGATTTACTCCTTTGCAGCCCCTCTCTAGAACATTGTATTCAACACACCACCAAGCTTTTAAATTTTTTGGCTGAATGCGGGTACCGGGTATCCAAAAGGAAGGCCCAATTAACCTCTCCAAAAGTTTCATACCTAGGATTAATCATAACTCCAAATACCCGAGAAATTCCGCCGGCACGAAAGCAAGGCGTTCAACAAATCCCATTTCCTAAAACAAAAAGGGACTTACTTTCTTTCCTCGGATTAGTGGGATATTTCCGATTATGGATAGCAAATTTTGCCATTATCGCTAAACCCCTTTATGAACACACAAAAGGAAATCTTGACCAACCACTCACTCCCACCCCAGACCTTTATCATGCTTTCTCTCACCTAAAACGTGCCTTATTACAGGCCCCCGCTTTAGGCCTTCCAAACCCCCTAAGACCTTTTCATCTATATTTACACAGTTCTCATAATCAGGCCCTTGGACTATTAGCCCAACCCATGGGAGACTCCCTCCAACCAGTGGCATATTTTTCAAAACAACTAGACCCCATTTACAAAANCTGGCCCCTTTGCTTAAAAATTTTGGCCACAGCCTCTCTAATTATCCCTGAGGCACAAAAACTCACGTTCTACGAACCCCTTCAGGTATTTTCTTCTCACAGTCTACAAGATATGCTCAGCCATAAGGCGCTCACCTCCATCTCATCCTCTCGCATGCAAGCCCTACATTCAACTCTCCTTCAACCCTCTATCTCTCTTCATAGATGCTCCCCTCCTAATCCCGCCACTCTTTTACCTTCAACACCAATTTTGGACCCCGACCAACACTCATGCTCTGATCTAATTGAAAGTTCTCTCACCATGTTTCACCACCTTACTTCCACTCACATAAAGGGAGCCCCAGATTGGTTTATAGATGGCAGCGCATCAAAAAACCCTCCCCTCCAAGCAGGATATGCCATCATTGAGGGATATCATGATGATACCCACTCTCTCCCACCTAGAAGAGTCGTAGAGGCTGCCCCCTTGCCTTTGGGCACATCCTCCCAACAAGCAGAATTAGTTGCCCTAATAAGAGCACTAACCCTAGCAAAAAACACACAAGTTAATATATACACCGATTCTAAATATGCCTATAACATCATCCATTCCAATGCCCAAATTTGGAGCGAGCGGGGCTATCTCACGGCTAAGGGAACCCCTATCATTAATGGAAAACTAATCCATCATCTACTAAAGGCAGCTCTACTTCCAGAAAAGGTTGCAGTTATCCATTGCAAAGGACATCAATCAGACAAAAGCCACATTTCTTTAGGGAACCGTGAGGCTGACTATTGGGCAAAACACGCCTCAACCAATCACCCAATTCCCCAATACCTATTTCCCCTCATACAACATATCCCCTCCTTTTATCCAGAACACCAAACACAACAACTAATCACGGCGGGGGCACAATTCAAACCCCCATACTGGTTCATACAAAACAAATTAGTCCTACCTGACCCTGAAAAAACAACTCTTTTACGGGACATTCACAACCTCTTCCACACTAGCCATTCCCCTCTACAACATTTCTTAAGTTCCCATATACACATAACCCCAGATATAAAGGAACAGTTAAAAGCCATTTCCCATCAATGCTCTATTTGCCAGAAAGCTTCACCCCACTCCAACACTAGACCCCCTTCTTTCCCAACCCATCAAGCCAGGGGACACCTTCCAGGACAGGACTGGCAAATTGATTTTACCCATATGCCCCCAGTAAAAAAGGTTCGATTTCTTTTAGTTCTGGTTGATACCTTTTCGGGATGGGTCGAGGCTTTTCCCACAACCAACAAACGAGCTTCTACTGTCACCTCCAAATTAATAACAGAAATCATCCCCAGGTTCGGGGTGCCTCTTTCTTTTCAATCTGATAATGGTCCTGAATTCATTTCTCAAATTACTCAAACACTTGCACAAGCCCTACAAATCACCTGGAAGCTACACATCCCCTATCGACCTCAATCTTCAGGAAAGGTTGAAAAAATGAATGGCATTCTAAAAAACACCCTCACCAGGTACTCACTCCAAACACATAAAGACTGGGTTACACTTTTGCCTTTGGCCCTTCTAAAAATTCGGGCGCTCCCACGTAAACCTTTAATGCTCAGCCCCTTTGAACTCATGTATGGGAGACCACTCGCCCCTTTTGTTCCACCTCAGGGTCAAGCCCCACCTCTACCAACCCCTCTCGTTTCCCCTCTTCTACATACCATCCGCCATTTCATTTGGGAATATGCTGACAAATACCTGCCACAACCCGTCGCCGACTCCTCTAATCCCTTCCTACAGCCAGGAGACTGGGTTCTGGTAAAAGATCCCAGTCCTACCCCCAATTCCCCCCTCACACCTAAATGGAAGGGACCTTACCAGATCATCCTTACTACACCCACGGCAGCAAAACTCCAGGGACTCCCCAGCTGGTTTCATTATACTTCTCTCAAGAAAACAGACTTCCCTTCACCACATACCCAAACAACCAAATCTAAAACCCCTTCAGCCTTCTCTTGTGTCTCCACAGGACCCACTTCCCTTCGCCTCACCCGAATCCCGGAGGAAAAGGAAGAGAAATCCACATAAGCCGCTTATGTCTCTTTCTCTCCCAAACTTTCATCGCTTCCTAACCAACCTTGTTACAGACCTTCAGTGGTACCCTTACGAAACTCCCATTATACATCCTGATCAGCTCCTTACTGTTCTATGGGACCTACGGCTTCAAGGAACTTTCCAGGACTTTACTCCTACCCAAATAACTTTTTTCTCTTTTTGCTTGTTTCTTTCAATATAAATTCCCTAATCACATCAACCTCACCAATACAACCACTCCTCACTGCTCTCAAACTAGAACGCTCTATAAACCTTACACAATCCCTCTTGCTGCAAGCTAACTCTTCCTTTGCTCCGGAATGCTGGATGTGCTTATCGCTGTCTTCCTCAGCTTACACAGCCCTTCCTACACCCCTTCATGACCTTTTAACAGGAAACATAACCCTAATCTATAAACTCCAAAAAGGAGCTTCCTTTTTTGAAAGAGCTGACACCCTGGTCGGCGATTATCCCACTTCCAGGGCCAATCAGGCCAACAAATTATTTCAAACCTATTACAACTCCCTACAACGCCTTAAGCCCCAAGGCCCTCCCATTGAAGGGCCCATAACTAAACACACCCCCCTTTTACAACAAGCCTCACTTTGCTTTTCAGCCTCTGAGGGAAATTTCCCTGTAGGGTCCTTAACACCTAACCAATGCAACCGCACTATCATTGTTAAACACCCCTCTGACCATCAAACTAACCGAGTTGACTACCAAGTATCACCTGAAGCGAACGGAGCATTTCTGCAACCGGCTCGTTTTACAGCCTCTCCCTCAACCAATGCCTCCGGCCTAACCTGTGCTGCCCCTAGTGCCCACCTTTTTCCATGGCTCAATATCAATGGTGCAACATCCGACCGCATTAAATGTGTAAAAAATAACTCTTCCTATATCTCTACTATAGTGGGTGTCTCCCTGGCCTCCTCCTTGTCCACCTGGAGTAATGAACCACAGGAAAGAAAAAACACCCCATCTTTAATTCACTTGTTTTCTTTCCATATCTCCGCCTGTATTTACGACAAAGGCTTGTTCTTTTTGTGTGGCACCAACACATATCTTTGTCTCCCCACCAACCGGACCGGAACCTGTACCCTAGTTTATCTTTCTCCCTCCATTGGACTAGTTCCTCCTAATCAACCTTTGCCCATTCCATCCGTCCAATATGTTAGGAAAAGGAGGGCCATCCACGTCATTCCTTTAATGGCTGCCTTAGGTATAACCTCCGGACTTGGATTGGGAGCAGGCGGATTGGCCACCTCCTTAACATACTTTAAAGCTCTTTCAACAGAACTACAGGGTTCTTTAGAAGATATAGCCCGAAGCCTTATAAGAGTCCAAGACCAACTAGACTCCTCGGCTGGAGCAGTCCTCCAAAACAGACGGGGACTAGATCTTATAACGGCTGAAAAAGGGGGCCTCTGCCTCTCATTGGGTGAGGAATGTTGCTTCTATCTCAACCAATCGGGCCTAGTAAGAGACGCTGCTGAAAAACTTAAAGAAAGGGCTAAAAAGCTAAGGGAATACCAAAACAACCAAATAGATTCTTGGTTTGGGAACAAAATCATAACATGGGTCATCCCATTCCTGGGCCCTCTCCTAATAATATGCCTAGGACTAATGTTCTTACCCTGCCTAATTAACCTTTTTCAAAGATTTTTAACCGACAGAATCATGGCCATTTCGCAGACAACTACCCAAAAACATCTACAGACGGCGTTGCTCCTGCAGTCAATCCGAGACCAAAAAACTCTCCGCCCCCCCCTCAGCAGGAAGTAGCCAGAAAGAACACGTCGCCCCTCGTCCTTTTNATAACTATAGGGTCTGGAT
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| HERVFH19 | BPC5 | 6059 | 6088 | - | -48.82 | TTATATTGAAAGAAACAAGCAAAAAGAGAA |
| HERVFH19 | BPC5 | 1335 | 1364 | - | -48.98 | CGATAACGAGAGGGATTTTCAGAGAAAGAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
