HERVFH19
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000181 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Haplorrhini |
| Length | 7719 |
| Kimura value | 8.51 |
| Tau index | 0.9535 |
| Description | Internal region of ERV1 endogenous retrovirus, HERVFH19 subfamily |
| Comment | Associated long terminal repeat is LTR19. |
| Sequence |
TTTGGTGCCGAAACCCGGGACGGGTGTTGGGGGCAGAGGCTCTCTTGCAACCCAGGAAGCAGTGGGCAGCGGCAGCTCATCCTGAGTTAACTCCTGGATCCTGAGGGTCTCTGGCCACCCGCCCCGTCTTTTCTCTCACTTCACTTTTCGAGCGATTTGCGTGAGGAGGACAACTGACCTGAAGGGGACTGCGAGGCTCGGGCCGGGGCTACTCCCCGGTGGGCTCTCAAAACCCTCAGGTCTCAGGAATCCACCTCCGACCGCCCGCAATGGGTATTTCGCTCTCTANCCCTCTCTCCCTCTTCCTCCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGTTCCTCGTGCGGCTCCAGTCCGGGAGGCCCTTTGCCGATTCCAACCGGAACATCCAACATCGGACACTAATCCAGCCGNCTGGTAAGATCTGCCTTCCCCTGGCTTTCTCGCGGTACCCGGGAAAGTCAGGTCTGCCGTCCNGGTCCTCGGAGGACCAGCGGGACTAAGCTAGAGGAAATCTTGGGGACGCCCAGTTTCTTCTCAGCTTAACCGTCCTCTTTAGAAAGAGGATTCCGGGTCTCTGTCTTTCGTCTGGGGACGCCTAGAACAAAAACAGACACCCTCGGCTTCCTCTTACCAGTCCACATGGGTGCCAAACAATCCCACATCCCTACGTCCTCCCCACTGGGCTGTCTCCTTCACAACCTCGCCAAACTTGGCTTACGGGGGAGCCTAAAGCCAAAGCATTTAGTTTTTTATTGCAACACGGCCTGGCCCCAATACAAATTAGATAACGACAGCCGATGGCCCAAAAACGGCACCTTTGACTTTCAAATTCTCAGGGACCTTGACAACTTTATAACCAGGAACGGCAAATGGCAAGAGGTTCCCTATATTCAGGCTTTCTTCTACCTTAAATCCCGACCCTCCCTATGTCAAGCTTGCACCCCTCATGAAATCCTTCTTCTTAATGAAAACCCTCCCCGGGTCTCCCCTTCCTCCGNANCCCNTNCNNCCGNNNNNNNNNNCGNNAAAACCCCTTCCTCCGAAACCCCTTTTGACCCTGCAGATGAACCCCCTCCGTATTCTCAACCCCCTGCATCCGCTCCTCGCCCGNCCGAACCCTCCGCCCCGNCGGCCCCTCCTGCCCCCAAGCCTTTAGCCCCAAACCCCGCCCCTCCTCCTTCTCCACCNGTTACCCGTTCAAAAACTACCAGTCAAACCACCTCTGCCATTCTCCCTCTCCGGGAAGTGGCTGGGGTTGAAGGCATTGCTCGCGTTCATGTCCCTTTCTCCACGTCTGATTTGTCGCAGATCAAACAGCACCTGGGATCTTTCTCTGAAAATCCCTCTCGTTATCGCAGGGAATTCCTGCACATAACCCAATCCTTTAATTTAACTTGGCATGACATTTATATAATTCTAACCTCCACCCTCACTCCTGATGAAAAGGAGCGCATCTGGCGTTCAGCTGAAGCCCACGCAGATGAACTCCATAATCAAGCCCCTATACAAAATCCAGTGGCCAACGATGCAGTCCCCCGTAGAGACCCAGATTGGACTTACCAACAGGGAGACANTGGCATCAGGCGAAGAGACCACGTGATTACCTGTCCCCTCGCGGGCATGGACAAAAATGCCCATAAGGCAGTTAATTATGAAAAACTCAGAGAAATTACACAAGAGCCCCAGGAAAATCCTGCCCTTTTCTTATCACGCCTCACTGAAGCTATGCTAAAATATACCAATTTGGACCCAGAATCTAGAGAAGGTCAAACTTTTCTCCACCTCCAATTTGTTTCCCAATCCGCCCCAGATATCCAGAAAAAATTATAAAAATTAGAGGAGGGTCCCCAGACATCTCGGCGGGACCTCCTAAATGCGGCCTTCCGTGTCTTTAACAACAGAGACGAGGAACAAAAAATTCAAAAAGACAAACATCTCCGTTTAAAATACCAGATGCTCGCCTCTGCTGTCCAAAAGTCAGTTACACAAAAGCCTCCCGATAACCCGAAAGGAAACTCCCCCACCTCTCCGGGAGTCTGTTTCCGATGTGGCAACCCTGGACACTGGGCAAAGGCTTGTCCTAACCCCCGGCCCCCCACCAAACCGTGCCCAACTTGCGGTCTTTGGGGACACTGGAAAATGGACTGCCCCCAACGGGGACACCTTCCCCGTTCGGGTGCGGCTCATAATGAAGCCCCCTGACCATCACAGGAGGAAATCTCTTCACTGCTGGCGCTGACAACGGAGGACTGAGGGTGCCCGGGATCCTTCGCCCCCACGTCCAGTGAGTCCACGGAACCCAGGGTAATTGGGACGGTATCCGGTAAGATTATTTCCTTTCTTTTGGATACTGGGGCGAGCCTATCGGTATTAACTGAATATCAAGGCCCATTAGAACGTTCATCCGTTTCTGTTGTTGGCATGAAGGGCATACAAGAAACCCCATACAAAACACCGCCNCTATACTGCTCATTTCAGGGAGTCACCTTCACTCACTCTTTCTTGGTCATTCCTCATTGTCCCACTCCTTTACTAGGAAGGGACATCCTACACAAACTAGGGGGAATCATTCATTTATCGGCCCTACACCAAAGCCACCCTTATTTATTATTATGTCAAGAACAGAACCCCTCCTCAGACACTCNACATCAAACAGACTTAAATCCCAAATTCCTCAGCCAGGTAAATCCCATAGTATGGAACACCGACTCCCCCATAATAGCTACCCACCATTCTCCAATTCAAATTTCACTGAAGGATCCTAAGCGCTATATAGTGGTCCCACAATATCCCCTCAACCCTAATGGATTACGGGGACTCAAGCCCATCATCTCCCGACTTTTGGCTGCCAATATTTTAATCCCCACCCATTCTCCCCACAATACTCCTATTCTCCCAATTAAAAAACCGGATGGCTCCTATAGACTGGTTCAGGATTTGCGACAAATCAACTCCGCTATTGTTCCTGTTTGTCCTGTTGTCCCAAACCCCTACACCCTCCTATCGCGAATTCCTCCCAACACTAGCCATTTCTCTGTATTAGACCTCAAAGATGCCTTTTTTACTATCCCTCTACATCCCTCCTCTCAAAACCTTTTTGCTTTCACTTGGACCGACCCTGACACAGGCTACTCCCAACAACTCACCTGGACTGTCCTCCCCCAGGGGTTTAGGGACAGCCCTCACTATTTCGGTCAGGCACTTCAATTGGACCTCTCCCAACTACCTCTACAACCTAGCATTTTGCTTCAATATGTGGACGATTTACTCCTTTGCAGCCCCTCTCTAGAACATTGTATTCAACACACCACCAAGCTTTTAAATTTTTTGGCTGAATGCGGGTACCGGGTATCCAAAAGGAAGGCCCAATTAACCTCTCCAAAAGTTTCATACCTAGGATTAATCATAACTCCAAATACCCGAGAAATTCCGCCGGCACGAAAGCAAGGCGTTCAACAAATCCCATTTCCTAAAACAAAAAGGGACTTACTTTCTTTCCTCGGATTAGTGGGATATTTCCGATTATGGATAGCAAATTTTGCCATTATCGCTAAACCCCTTTATGAACACACAAAAGGAAATCTTGACCAACCACTCACTCCCACCCCAGACCTTTATCATGCTTTCTCTCACCTAAAACGTGCCTTATTACAGGCCCCCGCTTTAGGCCTTCCAAACCCCCTAAGACCTTTTCATCTATATTTACACAGTTCTCATAATCAGGCCCTTGGACTATTAGCCCAACCCATGGGAGACTCCCTCCAACCAGTGGCATATTTTTCAAAACAACTAGACCCCATTTACAAAANCTGGCCCCTTTGCTTAAAAATTTTGGCCACAGCCTCTCTAATTATCCCTGAGGCACAAAAACTCACGTTCTACGAACCCCTTCAGGTATTTTCTTCTCACAGTCTACAAGATATGCTCAGCCATAAGGCGCTCACCTCCATCTCATCCTCTCGCATGCAAGCCCTACATTCAACTCTCCTTCAACCCTCTATCTCTCTTCATAGATGCTCCCCTCCTAATCCCGCCACTCTTTTACCTTCAACACCAATTTTGGACCCCGACCAACACTCATGCTCTGATCTAATTGAAAGTTCTCTCACCATGTTTCACCACCTTACTTCCACTCACATAAAGGGAGCCCCAGATTGGTTTATAGATGGCAGCGCATCAAAAAACCCTCCCCTCCAAGCAGGATATGCCATCATTGAGGGATATCATGATGATACCCACTCTCTCCCACCTAGAAGAGTCGTAGAGGCTGCCCCCTTGCCTTTGGGCACATCCTCCCAACAAGCAGAATTAGTTGCCCTAATAAGAGCACTAACCCTAGCAAAAAACACACAAGTTAATATATACACCGATTCTAAATATGCCTATAACATCATCCATTCCAATGCCCAAATTTGGAGCGAGCGGGGCTATCTCACGGCTAAGGGAACCCCTATCATTAATGGAAAACTAATCCATCATCTACTAAAGGCAGCTCTACTTCCAGAAAAGGTTGCAGTTATCCATTGCAAAGGACATCAATCAGACAAAAGCCACATTTCTTTAGGGAACCGTGAGGCTGACTATTGGGCAAAACACGCCTCAACCAATCACCCAATTCCCCAATACCTATTTCCCCTCATACAACATATCCCCTCCTTTTATCCAGAACACCAAACACAACAACTAATCACGGCGGGGGCACAATTCAAACCCCCATACTGGTTCATACAAAACAAATTAGTCCTACCTGACCCTGAAAAAACAACTCTTTTACGGGACATTCACAACCTCTTCCACACTAGCCATTCCCCTCTACAACATTTCTTAAGTTCCCATATACACATAACCCCAGATATAAAGGAACAGTTAAAAGCCATTTCCCATCAATGCTCTATTTGCCAGAAAGCTTCACCCCACTCCAACACTAGACCCCCTTCTTTCCCAACCCATCAAGCCAGGGGACACCTTCCAGGACAGGACTGGCAAATTGATTTTACCCATATGCCCCCAGTAAAAAAGGTTCGATTTCTTTTAGTTCTGGTTGATACCTTTTCGGGATGGGTCGAGGCTTTTCCCACAACCAACAAACGAGCTTCTACTGTCACCTCCAAATTAATAACAGAAATCATCCCCAGGTTCGGGGTGCCTCTTTCTTTTCAATCTGATAATGGTCCTGAATTCATTTCTCAAATTACTCAAACACTTGCACAAGCCCTACAAATCACCTGGAAGCTACACATCCCCTATCGACCTCAATCTTCAGGAAAGGTTGAAAAAATGAATGGCATTCTAAAAAACACCCTCACCAGGTACTCACTCCAAACACATAAAGACTGGGTTACACTTTTGCCTTTGGCCCTTCTAAAAATTCGGGCGCTCCCACGTAAACCTTTAATGCTCAGCCCCTTTGAACTCATGTATGGGAGACCACTCGCCCCTTTTGTTCCACCTCAGGGTCAAGCCCCACCTCTACCAACCCCTCTCGTTTCCCCTCTTCTACATACCATCCGCCATTTCATTTGGGAATATGCTGACAAATACCTGCCACAACCCGTCGCCGACTCCTCTAATCCCTTCCTACAGCCAGGAGACTGGGTTCTGGTAAAAGATCCCAGTCCTACCCCCAATTCCCCCCTCACACCTAAATGGAAGGGACCTTACCAGATCATCCTTACTACACCCACGGCAGCAAAACTCCAGGGACTCCCCAGCTGGTTTCATTATACTTCTCTCAAGAAAACAGACTTCCCTTCACCACATACCCAAACAACCAAATCTAAAACCCCTTCAGCCTTCTCTTGTGTCTCCACAGGACCCACTTCCCTTCGCCTCACCCGAATCCCGGAGGAAAAGGAAGAGAAATCCACATAAGCCGCTTATGTCTCTTTCTCTCCCAAACTTTCATCGCTTCCTAACCAACCTTGTTACAGACCTTCAGTGGTACCCTTACGAAACTCCCATTATACATCCTGATCAGCTCCTTACTGTTCTATGGGACCTACGGCTTCAAGGAACTTTCCAGGACTTTACTCCTACCCAAATAACTTTTTTCTCTTTTTGCTTGTTTCTTTCAATATAAATTCCCTAATCACATCAACCTCACCAATACAACCACTCCTCACTGCTCTCAAACTAGAACGCTCTATAAACCTTACACAATCCCTCTTGCTGCAAGCTAACTCTTCCTTTGCTCCGGAATGCTGGATGTGCTTATCGCTGTCTTCCTCAGCTTACACAGCCCTTCCTACACCCCTTCATGACCTTTTAACAGGAAACATAACCCTAATCTATAAACTCCAAAAAGGAGCTTCCTTTTTTGAAAGAGCTGACACCCTGGTCGGCGATTATCCCACTTCCAGGGCCAATCAGGCCAACAAATTATTTCAAACCTATTACAACTCCCTACAACGCCTTAAGCCCCAAGGCCCTCCCATTGAAGGGCCCATAACTAAACACACCCCCCTTTTACAACAAGCCTCACTTTGCTTTTCAGCCTCTGAGGGAAATTTCCCTGTAGGGTCCTTAACACCTAACCAATGCAACCGCACTATCATTGTTAAACACCCCTCTGACCATCAAACTAACCGAGTTGACTACCAAGTATCACCTGAAGCGAACGGAGCATTTCTGCAACCGGCTCGTTTTACAGCCTCTCCCTCAACCAATGCCTCCGGCCTAACCTGTGCTGCCCCTAGTGCCCACCTTTTTCCATGGCTCAATATCAATGGTGCAACATCCGACCGCATTAAATGTGTAAAAAATAACTCTTCCTATATCTCTACTATAGTGGGTGTCTCCCTGGCCTCCTCCTTGTCCACCTGGAGTAATGAACCACAGGAAAGAAAAAACACCCCATCTTTAATTCACTTGTTTTCTTTCCATATCTCCGCCTGTATTTACGACAAAGGCTTGTTCTTTTTGTGTGGCACCAACACATATCTTTGTCTCCCCACCAACCGGACCGGAACCTGTACCCTAGTTTATCTTTCTCCCTCCATTGGACTAGTTCCTCCTAATCAACCTTTGCCCATTCCATCCGTCCAATATGTTAGGAAAAGGAGGGCCATCCACGTCATTCCTTTAATGGCTGCCTTAGGTATAACCTCCGGACTTGGATTGGGAGCAGGCGGATTGGCCACCTCCTTAACATACTTTAAAGCTCTTTCAACAGAACTACAGGGTTCTTTAGAAGATATAGCCCGAAGCCTTATAAGAGTCCAAGACCAACTAGACTCCTCGGCTGGAGCAGTCCTCCAAAACAGACGGGGACTAGATCTTATAACGGCTGAAAAAGGGGGCCTCTGCCTCTCATTGGGTGAGGAATGTTGCTTCTATCTCAACCAATCGGGCCTAGTAAGAGACGCTGCTGAAAAACTTAAAGAAAGGGCTAAAAAGCTAAGGGAATACCAAAACAACCAAATAGATTCTTGGTTTGGGAACAAAATCATAACATGGGTCATCCCATTCCTGGGCCCTCTCCTAATAATATGCCTAGGACTAATGTTCTTACCCTGCCTAATTAACCTTTTTCAAAGATTTTTAACCGACAGAATCATGGCCATTTCGCAGACAACTACCCAAAAACATCTACAGACGGCGTTGCTCCTGCAGTCAATCCGAGACCAAAAAACTCTCCGCCCCCCCCTCAGCAGGAAGTAGCCAGAAAGAACACGTCGCCCCTCGTCCTTTTNATAACTATAGGGTCTGGAT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| HERVFH19 | BPC1 | 318 | 341 | - | 35.20 | CGGAGAGAGAGAGAGAGAGAGAGA |
| HERVFH19 | BPC5 | 309 | 338 | - | 35.09 | AGAGAGAGAGAGAGAGAGAGAGAGAGAAGG |
| HERVFH19 | BPC5 | 313 | 342 | - | 35.02 | ACGGAGAGAGAGAGAGAGAGAGAGAGAGAG |
| HERVFH19 | BPC1 | 308 | 331 | - | 34.33 | GAGAGAGAGAGAGAGAGAGAAGGG |
| HERVFH19 | BPC1 | 320 | 343 | - | 31.36 | AACGGAGAGAGAGAGAGAGAGAGA |
| HERVFH19 | BPC6 | 309 | 329 | + | 30.34 | CCTTCTCTCTCTCTCTCTCTC |
| HERVFH19 | BPC1 | 324 | 347 | - | 28.06 | GAGGAACGGAGAGAGAGAGAGAGA |
| HERVFH19 | BPC1 | 306 | 329 | - | 27.27 | GAGAGAGAGAGAGAGAGAAGGGAG |
| HERVFH19 | BPC6 | 307 | 327 | + | 26.49 | TCCCTTCTCTCTCTCTCTCTC |
| HERVFH19 | BPC5 | 315 | 344 | - | 26.30 | GAACGGAGAGAGAGAGAGAGAGAGAGAGAG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
