HERV17
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000628 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Catarrhini |
| Length | 8839 |
| Kimura value | 4.20 |
| Tau index | 0.9778 |
| Description | Internal sequence of the class I endogenous retrovirus |
| Comment | Internal sequence of HERV17 (HERV-W) flanked by LTR17 long terminal repeats. Update on existing entry. Most copies in the seed alignment are processed pseudogenes of ERV transcripts |
| Sequence |
TTTGGTGGCCCACGAAGGGACTCTCCAAAGCGGTGAGTAATATTGGACCACTTTCGCTTGCTATTCTGTCCTATCCTTCCTTAGAATTGGAGGAAAATACCGGGCACCTGTCGGCCGGTTAAAAACGATTAGCGTGGCCGCCGGACTTAAGACTCAGGTGTGAGGCTNTCTGGGGAAGGGCTTTCTAACAACCCCCAACCCTTCTGGGTTGGGAGCGTTGGTCTGCCTGGAACCAGCTTCCGCTTTCAATTTTCCTGGGGGAAGCCGAGGGCCGACTAGAGGCAGAAAGCTGTCGTCCCGAACTCCCGGCATTAGCCGGTTGAGATCATGGCGCAGCCAGAAGTCTCTACTCAACAGTCGCCCATGCGTGCGCCCCTACCTTTCCTTCTGACCCATACCTCCTGGGTCCCGACCACGACTTTCTTGAAAGTGTAGCCCCAAAATTCTCCTTACCTCTGAATCTACTTCCTCCGATCCCTGCCTCCTAGGTACTAATGGTTCAGACTTTCATTTCCTCTCCCAAGTATTAGAGCAAGTTGTATCTCCAAAGGGATCTAAGGAAGCTCTACGCTGCGTCCTTAGGCACCTAGGCTATGAACCCAGGGAGTCTTGTCCCTGGTGTCCCTCCCGATTTAGGTATACAGCTCTCGACATGGGCAGTTATGTGGGACCCGTTCCCCACCACCCTTGCCAGGGCCCCAAGTTTGTAAATGGCTAAGAGGATTGCTCTCCCATTGTGTAAGATGCTCTCCTCCCCCAATTTCTACCCAGCTTACCCCTCTGCAATACAATCTCCAAGCCTTGGCTCCTTGGCCAGGGCCTTAGAACTGATGACCCAGTACTTTAACAACTGGAACTGGGTCTACGACAACATAATAGATCAGGATGAAAGCGAATTGAGTAAATTAAAGGGAGGCGCATATTCCTATAGTGGCAAATGGGGGCAACGAGCGAACGTCCTTCCGCTGTGTTTCCAAAATCCATCTACAGAGACAGAGAGGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAAAGAGAGAAAGAGAGAGATAGAAGTAGTAAAGAAAAAACAGTGTGCCCTATTCCTTTAAAAGCCAGGGTAAATTTAAAACCTATAATTGATAATTGAAGGTCTTCTCCGTGACCCTATAACACTCCAATACTACCTTGTTGTCAGTGTAAACAAGGGCGTAGCCCGAAAGCACTGAGACCACTGACAACCCGTAGCCTTCCTATCAAAAATCCTTAACCCAGTAACCCGCGGATGGCCCAAATGCATTCAATCTGTAGCGGCAACTGCTTTGCTAACAGAAGAAAGTAGAAAAGTAACTTTTAGAGGAAACCTCATTGTGAGCACACCTCACCAGTTCAGAACTATCCTAAGTCAAAAAAGCAAAAAGGTAGCTTACTAACTCAAAAATCTTAAAGTATGGGGCTATTCTGTTAGAAAAAGGTGATTTAACACTAACCACTGAAAATTCCCTTAACCCAGCAGATTTCCTAACAGGGGATTTAAATCTTAATTACCATACAAAGGTCCGACCAGACCTAGGAGGAACTCCCTTCAGGACAGGACGATAGATGGTTCCTCCCAGGTGATTGAGGAAAAAACCACAATGGGTATTCAGTAATTGATAGGGAGACTCTTGTGGAAGCAGAGTTAGGAAAATTGCCTAATAATTGGTCTGCTCAAACGTGCGAGCTGTTTGCACTCAGCCAAGCCTTAAAGTACTTACAGAATCAAAAAACTCTATCTCAATCCTGACTCAAAAGGTTACCTACACCCTCTCTGAAACGAATTTGCATAAGAACTGTTGTTTATGGGAATGCATCTTGATGGGGCAGCTGGGTTGTTATGAAATACTCAGGAACCCAGCCCAGCTCTAGGACTCACCCCTGAGCGCAAAGGCAATGTTGGGCACGCTGGTAAAGGACCACTAGAATCCAGCAGCCCGGACCCCTTTCTTTGTGGTCAAGAAAGGCGGGAAAACGGGTGCAGGACTGCTACATCGGTGAGCGTAACTAATCCGATAAGCAGAGGTCCATGGGTGGTTACGCACCCTGGAAAGGAATAAGCATTAGGACCATAGAGGACGCTCTAGGACTAATGCTCATCGGAAAATGACTAGGGGTGCTGGCATCCCTATGTTCTTTTTTCAGATGGGAAACGTTCCCCCCAAGGCAAAAACGCCCCTAAGATGTATTCTGGAGAATTNGGNCCAGTTTGACCCTCAGACGCTAAGAAAGAAACGACTTATATTCTTCTGCAGTACCGCCTGGCCACGATATCCTCTTCAAGGGGGAGAAACCTGGCCTCCTGAGGGAAGTATAAATTATAACACCATCTTACAGCTAGACCTCTTTTGTAGAAAAGAAGGCAAATGGAGTGAAGTGCCATATGTACAAACTTTCTTTTCATTAAGAGACAACTCGCAATTATGTAAAAAGTGTGATTTATGCCCTACAGGAAGCCCTCAGAGTCTACCTCCCTACCCCGGCGTCCCCCCGACTCCTTCCCCAACTAATAAGGACCCCCCTTCAACCCAAACGGTCCAAAAGGAGATAGACAAAGGGGTAAACAATGAACCAAAGAGTGCCAATATTCCCCGATTATGCCCCCTCCAAGCGGTGGGAGGAGGAGAATTCGGCCCAGCCAGAGTGCATGTACCTTTTTCCCTCTCAGACTTGAAGCAAATTAAAATAGACCTAGGTAAATTCTCAGATAACCCTGATGGCTATATTGATGTTTTACAAGGGTTAGGACAATCCTTTGATCTGACATGGAGAGATATAATGTTACTGCTAGATCAGACACTAACCCCAAATGAGAGAAGTGCCGCCATAACTGCAGCCCGAGAGTTTGGCGATCTCTGGTATCTCAGTCAGGTCAATGATAGGATGACAACAGAGGAAAGAGAACGATTCCCCACAGGCCAGCAGGCAGTTCCCAGTGTAGACCCTCACTGGGACGCAGAATCAGAACATGGAGATTGGTGCCGCAGACATTTGCTAACTTGCGTGCTAGAAGGACTAAGGAAAACTAGGAAGAAGCCTATGAATTATTCAATGATGTCCACTATAACACAGGGAAAGGAAGAAAATCCTACTGCCTTTCTGGAGAGACTAAGGGAGGCATTGAGGAAGCATACCTCTCTGTCACCTGACTCTATTGAAGGCCAACTAATCTTAAAGGATAAGTTTATCACTCAGTCAGCTGCAGACATTAGAAAAAAACTTCAAAAGTCCGCCTTAGGCCCGGAGCAAAACTTAGAAACCCTATTGAACTTGGCAACCTCGGTTTTTTATAATAGAGATCAGGAGGAGCAGGCGGAACGGGACAAACGGGATAAGAAAAAAAAAGGCCACCGCTTTAGTCATGGCCCTCAGGCAAGCGGACTTTGGAGGCTCTGGAAAAGGGAAAGGCTGGGCAAATCGAATGCCTAATAGGGCTTGCTTCCAGTGCGGTCTACAAGGACACTTTAAAAAAGATTGTCCGAATAGAAATAAGCCGCCCCCTCGTCCATGCCCCTTATGTCAAGGGAATCACTGGAAGGCCCACTGCCCCAGGGGACGAAGGTCCTCTGAGTCAGAAGCCACTAACCAGATGATCCAGCAGCAGGACTGAGGGTGCCCGGGGCAAGCGCCAGCCCATGCCATCACCCTCACAGAGCCCCGGGTATGCTTGACCATTGAGGGCCAGGAGGTTAACTGTCTCCTGGACACTGGCGCGGCCTTCTCAGTCTTACTCTCCTGTCCCGGACAACTGTCCTCCAGATCTGTCACTATCCGAGGGGTCCTAGGACAGCCAGTCACTAGATACTTCTCCCAGCCACTAAGTTGTGACTGGGGAACTTTACTCTTTTCACATGCCTTTCTAATTATGCCTGAAAGCCCCACTCCCTTGTTAGGGAGAGACATTCTAGCAAAAGCAGGGGCCATTATACACCTGAACATAGGAGAAGGAACACCCGTTTGTTGTCCCCTGCTTGAGGAAGGAATTAATCCTGAAGTCTGGGCAACAGAAGGACAATATGGACGAGCAAAGAATGCCCGTCCTGTTCAAGTTAAACTAAAGGATTCCGCCTCCTTTCCCTACCAAAGGCAGTACCCCCTTAGACCCGAGGCCCAACAAGGACTCCAAAAGATTGTTAAGGACCTAAAAGCCCAAGGCCTAGTAAAACCATGCAATAGCCCCTGCAATACTCCAATTTTAGGAGTACAGAAACCCAACGGACAGTGGAGGTTAGTGCAAGATCTCAGGATTATCAATGAGGCCGTTGTCCCTCTATACCCAGCTGTACCTAACCCTTATACTCTGCTTTCCCAAATACCAGAGGAAGCAGAGTGGTTTACAGTCCTGGACCTTAAGGATGCCTTTTTCTGCATCCCTGTACATCCTGACTCTCAATTCTTGTTTGCCTTTGAAGATCCTTCGAACCCAACGTCTCAACTCACCTGGACTGTTTTACCCCAAGGGTTCAGGGATAGCCCCCATCTATTTGGCCAGGCATTAGCCCAAGACTTGAGCCAGTTCTCATACCTGGACACTCTTGTCCTTCGGTACGTGGATGATTTACTTTTAGCCGCCCGTTCAGAAACCTTGTGCCATCAAGCCACCCAAGCGCTCTTAAATTTCCTCGCCACCTGTGGCTACAAGGTTTCCAAACCAAAGGCTCAGCTCTGCTCACAGCAGGTTAAATACTTAGGGCTAAAATTATCCAAAGGCACCAGGGCCCTCAGTGAGGAACGTATCCAGCCTATACTGGCTTATCCTCATCCCAAAACCCTAAAGCAACTAAGAGGGTTCCTTGGCATAACAGGCTTCTGCCGAATATGGATTCCCAGGTACGGCGAAATAGCCAGGCCATTATATACACTAATTAAGGAAACTCAGAAAGCCAATACCCATTTAGTAAGATGGACACCTGAAGCAGAAGCGGCTTTCCAGGCCCTAAAGAAGGCCCTAACCCAAGCCCCAGTGTTAAGCTTGCCAACGGGGCAAGACTTTTCTTTATATGTCACAGAAAAAACAGGAATAGCTCTAGGAGTCCTTACACAGGTCCGAGGGACGAGCTTGCAACCCGTGGCATACCTGAGTAAGGAAATTGATGTAGTGGCAAAGGGTTGGCCTCATTGTTTACGGGTAGTGGCGGCAGTAGCAGTCTTAGTATCTGAAGCAGTTAAAATAATACAGGGAAGAGATCTTACTGTGTGGACATCTCATGATGTGAACGGCATACTCACTGCTAAAGGAGACTTGTGGCTGTCAGACAACCGTTTACTTAAATATCAGGCTCTATTACTTGAAGGGCCAGTGCTGCGACTGCGCACTTGTGCAACTCTTAACCCAGCCACATTTCTTCCAGACAATGAAGAAAAGATAGAACATAACTGTCAACAAGTAATTGCTCAAACCTACGCCGCTCGAGGGGACCTTCTAGAGGTTCCCTTGACTGATCCCGACCTCAACTTGTATACTGATGGAAGTTCCTTTGTAGAAAAAGGACTTCGAAAAGCGGGGTATGCAGTGGTCAGTGATAATGGAATACTTGAAAGTAATCCCCTCACTCCAGGAACTAGCGCTCAGCTGGCAGAACTAATAGCCCTCACTCGGGCACTAGAATTAGGAGAAGGAAAAAGGGTAAATATATATACAGACTCTAAGTATGCTTACCTAGTCCTCCATGCCCACGCAGCAATATGGAGAGAAAGGGAATTCCTAACTTCCGAGGGAACACCTATCAAACATCAGGAAGCCATTAGGAGATTATTATTGGCTGTACAGAAACCTAAAGAGGTGGCAGTCTTACACTGCCGGGGTCATCAGAAAGGAAAGGAAAGGGAAATAGAAGGGAACCGCCAAGCGGATATTGAAGCCAAAAGAGCCGCAAGGCGGGACCCTCCATTAGAAATGCTTATAGAAGGACCCCTAGTATGGGGTAATCCCCTCCGGGAAACCAAGCCCCAGTACTCAGCAGAAGAAATAGAATGGGGAACCTCACGAGGACATAGTTTCCTCCCCTCAGGATGGCTAGCCACCGAAGAAGGAAAAATACTTTTGCCTGCAGCTAACCAATGGAAATTACTTAAAACCCTTCACCAAACCTTTCACTTAGGCATTGATAGCACCCATCAGATGGCCAAATCATTATTTACTGGACCAGGCCTTTTCAAAACTATCAAGCAGATAGTCAGGGCCTGTGAAGTGTGCCAAAGAAATAATCCCCTGCACTTATCGCCAAGCTCCTTCAGGAGAACAAAGAACAGGCCATTACCCAGGAGAAGACTGGCAACTAGATTTTACCCACATGCCCAAATCTCAGGGATTTCAGTATCTACTAGTCTGGGTAGATACTTTCACTGGTTGGGCGGAGGCCTTCCCTTGTAGGACAGAAAAGGCCCAAGAGGTAATAAAGGCACTAGTTCATGAAATAATTCCCAGATTCGGACTTCCCCGAGGCTTACAGAGTGACAATGGCCCCGCTTTCAAGGCTGCAGTAACCCAGGGAGTATCCCAGGCGTTAGGCATACAATATCACTTACACTGCGCCTGGAGGCCACAATCCTCAGGAAAAGTCGAGAAAATGAACGAAACACTCAAACGACATCTAAAAAAGCTAACCCAGGAAACCCACCTCGCATGGCCTGCTCTGTTGCCTATAGCCTTACTAAGAATCCGAAACTCTCCCCAAAAAGCGGGACTTAGCCCATACGAAATGCTGTATGGACGGCCCTTCCTAACCAATGACCTTGTGCTTGACCGAGAGACGGCCAACTTAGTTGCAGACATCACCTCCTTAGCCAAATATCAACAAGTTCTTAAAACATTACAGGGAACCTGTCCCCGAGAGGAGGGAAAGGAATTATTCCACCCTGGTGACATGGTATTAGTCAAGTCCCTTCCCTCTAATTCCCCATCCCTAGATACATCCTGGGAAGGACCCTACCCAGTCATTTTATCTACCCCAACCGCGGTTAAAGTGGCTGGAGTGGAGTCTTGGATACATCACACTCGAGTCAAACCCTGGATACTGCCAAAGGAACCCGAAAATCCAGGAGACAACGCTAGCTATTCCTGTGAACCTCTAGAGGATCTGCGCCTGCTCTTCAAGCGACAACCGTGAGGAAAGTAACTAGAATCGTAGATCCCCATGGCCCTCCCTTGTCATATTTTTCTCTTTACTGTTCTCTTACCCCCTTTCACTCTCACTGCACCCCCTCCATGCCGCTGTACTACCAGTAGCTCCCCTTACCAAGAGCTTCTATGGAGAATGCGGCTTCCCGGAAATATTGATGCCCCATCGTATAGGAGTTTTTCTAAAGGAAACCCCACTTTCACCGCCCACACCCATATGCCCCGCAACTGCTATAACTCTGCCACTCTTTGCATGCATGCAAATACTCATTATTGGACAGGGAAAATGATTAATCCTAGTTGTCCTGGAGGACTTGGAGCCACTGTCTGTTGGACTTACTTCACCCATACCGGTATGTCTGATGGGGGTGGAGTTCAAGATCAGGCAAGAGAAAAACACGTAAAGGAAGTAATCTCCCAACTGACCCGGGTACATAGCACCCCTAGCCCCTACAAAGGACTAGATCTCTCAAAACTACATGAAACCCTCCGTACCCATACTCGCCTGGTAAGCCTATTTAATACCACCCTCACTGGGCTCCATGAGGTCTCGGCCCAAAACCCTACTAACTGTTGGATGTGCCTCCCCCTGCACTNCAGGCCATACATTTCAATCCCTGTATCTGAACAATGGAACAACTTCAGCACAGAAATAAACACCACTTCCGTTTTAGTAGGACCTCTTGTTTCCAATCTGGAAATAACCCATACCTCAAACCTCACCTGTGTAAAATTTAGCAATACTATAGACACAACCAACTCCCAATGCATCAGGTGGGTAACTCCTCCCACACGAATAGTCTGCCTACCCTCAGGAATATTTTTTGTCTGTGGTACCTCAGCCTATCGTTGTTTGAATGGCTCTTCAGAATCTATGTGCTTCCTCTCATTCTTAGTGCCCCCTATGACCATCTACACTGAACAAGATTTATACAATCATGTCGTACCTAAGCCCCGCAACAAAAGAGTACCCATTCTTCCTTTTGTTATCGGAGCAGGAGTGCTAGGCGGACTAGGTACTGGCATTGGCGGTATCACAACCTCTACTCAGTTCTACTACAAACTATCTCAAGAACTAAATGGTGACATGGAACGGGTCGCCGACTCCCTGGTCACCTTGCAAGATCAACTTAACTCCCTAGCAGCAGTAGTCCTTCAAAATCGAAGAGCTTTAGACTTGCTAACCGCCGAAAGAGGGGGAACCTGTTTATTTTTAGGGGAAGAATGCTGTTATTATGTTAATCAATCCGGAATCGTCACCGAGAAAGTTAAAGAAATTCGAGATCGAATACAACGTAGAGCAGAGGAGCTTCAAAACACCGGACCCTGGGGCCTCCTCAGCCAATGGATGCCCTGGATTCTCCCCTTCTTAGGACCTCTAGCAGCTATAATATTGTTACTCCTCTTTGGACCCTGTATCTTTAACCTCCTTGTTAAGTTTGTCTCTTCCAGAATCGAAGCTGTAAAACTACAAATCGTTCTTCAAATGGAGCCCCAGATGCAGTCCATGACTAAGATCTACCGCGGACCCCTGGACCGGCCTGCTAGCCCATGCTCCGATGTTAATGACATCGAAGGCACCCCTCCCGAGGAAATCTCAACTGCACGACCCCTACTACGCCCCAATTCAGCAGGAAGCAGTTAGAGCGGTCGTCGGCCAACCTCCCCAACAGCACTTGGGTTTTCCTGTTGAGAGGGGGATC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| HERV17 | DAL81 | 5457 | 5475 | - | -39.42 | ACAAGTTGAGGTCGGGATC |
| HERV17 | BPC5 | 1045 | 1074 | + | -41.20 | AGAGAGATAGAAGTAGTAAAGAAAAAACAG |
| HERV17 | BPC5 | 1041 | 1070 | + | -41.87 | AAAGAGAGAGATAGAAGTAGTAAAGAAAAA |
| HERV17 | BPC5 | 1043 | 1072 | + | -43.07 | AGAGAGAGATAGAAGTAGTAAAGAAAAAAC |
| HERV17 | BPC5 | 7189 | 7218 | - | -43.10 | GGGTGCAGTGAGAGTGAAAGGGGGTAAGAG |
| HERV17 | BPC5 | 2560 | 2589 | + | -43.22 | GGAGATAGACAAAGGGGTAAACAATGAACC |
| HERV17 | BPC5 | 7183 | 7212 | - | -43.96 | AGTGAGAGTGAAAGGGGGTAAGAGAACAGT |
| HERV17 | BPC5 | 7153 | 7182 | - | -47.99 | AAAGAGAAAAATATGACAAGGGAGGGCCAT |
| HERV17 | DAL81 | 260 | 278 | + | -52.00 | GGAAGCCGAGGGCCGACTA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
