HERV17

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0000628
TE superfamily	ERV1
TE class	LTR
Species	Catarrhini
Length	8839
Kimura value	4.20
Tau index	0.9778
Description	Internal sequence of the class I endogenous retrovirus
Comment	Internal sequence of HERV17 (HERV-W) flanked by LTR17 long terminal repeats. Update on existing entry. Most copies in the seed alignment are processed pseudogenes of ERV transcripts
Sequence	TTTGGTGGCCCACGAAGGGACTCTCCAAAGCGGTGAGTAATATTGGACCACTTTCGCTTGCTATTCTGTCCTATCCTTCCTTAGAATTGGAGGAAAATACCGGGCACCTGTCGGCCGGTTAAAAACGATTAGCGTGGCCGCCGGACTTAAGACTCAGGTGTGAGGCTNTCTGGGGAAGGGCTTTCTAACAACCCCCAACCCTTCTGGGTTGGGAGCGTTGGTCTGCCTGGAACCAGCTTCCGCTTTCAATTTTCCTGGGGGAAGCCGAGGGCCGACTAGAGGCAGAAAGCTGTCGTCCCGAACTCCCGGCATTAGCCGGTTGAGATCATGGCGCAGCCAGAAGTCTCTACTCAACAGTCGCCCATGCGTGCGCCCCTACCTTTCCTTCTGACCCATACCTCCTGGGTCCCGACCACGACTTTCTTGAAAGTGTAGCCCCAAAATTCTCCTTACCTCTGAATCTACTTCCTCCGATCCCTGCCTCCTAGGTACTAATGGTTCAGACTTTCATTTCCTCTCCCAAGTATTAGAGCAAGTTGTATCTCCAAAGGGATCTAAGGAAGCTCTACGCTGCGTCCTTAGGCACCTAGGCTATGAACCCAGGGAGTCTTGTCCCTGGTGTCCCTCCCGATTTAGGTATACAGCTCTCGACATGGGCAGTTATGTGGGACCCGTTCCCCACCACCCTTGCCAGGGCCCCAAGTTTGTAAATGGCTAAGAGGATTGCTCTCCCATTGTGTAAGATGCTCTCCTCCCCCAATTTCTACCCAGCTTACCCCTCTGCAATACAATCTCCAAGCCTTGGCTCCTTGGCCAGGGCCTTAGAACTGATGACCCAGTACTTTAACAACTGGAACTGGGTCTACGACAACATAATAGATCAGGATGAAAGCGAATTGAGTAAATTAAAGGGAGGCGCATATTCCTATAGTGGCAAATGGGGGCAACGAGCGAACGTCCTTCCGCTGTGTTTCCAAAATCCATCTACAGAGACAGAGAGGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAAAGAGAGAAAGAGAGAGATAGAAGTAGTAAAGAAAAAACAGTGTGCCCTATTCCTTTAAAAGCCAGGGTAAATTTAAAACCTATAATTGATAATTGAAGGTCTTCTCCGTGACCCTATAACACTCCAATACTACCTTGTTGTCAGTGTAAACAAGGGCGTAGCCCGAAAGCACTGAGACCACTGACAACCCGTAGCCTTCCTATCAAAAATCCTTAACCCAGTAACCCGCGGATGGCCCAAATGCATTCAATCTGTAGCGGCAACTGCTTTGCTAACAGAAGAAAGTAGAAAAGTAACTTTTAGAGGAAACCTCATTGTGAGCACACCTCACCAGTTCAGAACTATCCTAAGTCAAAAAAGCAAAAAGGTAGCTTACTAACTCAAAAATCTTAAAGTATGGGGCTATTCTGTTAGAAAAAGGTGATTTAACACTAACCACTGAAAATTCCCTTAACCCAGCAGATTTCCTAACAGGGGATTTAAATCTTAATTACCATACAAAGGTCCGACCAGACCTAGGAGGAACTCCCTTCAGGACAGGACGATAGATGGTTCCTCCCAGGTGATTGAGGAAAAAACCACAATGGGTATTCAGTAATTGATAGGGAGACTCTTGTGGAAGCAGAGTTAGGAAAATTGCCTAATAATTGGTCTGCTCAAACGTGCGAGCTGTTTGCACTCAGCCAAGCCTTAAAGTACTTACAGAATCAAAAAACTCTATCTCAATCCTGACTCAAAAGGTTACCTACACCCTCTCTGAAACGAATTTGCATAAGAACTGTTGTTTATGGGAATGCATCTTGATGGGGCAGCTGGGTTGTTATGAAATACTCAGGAACCCAGCCCAGCTCTAGGACTCACCCCTGAGCGCAAAGGCAATGTTGGGCACGCTGGTAAAGGACCACTAGAATCCAGCAGCCCGGACCCCTTTCTTTGTGGTCAAGAAAGGCGGGAAAACGGGTGCAGGACTGCTACATCGGTGAGCGTAACTAATCCGATAAGCAGAGGTCCATGGGTGGTTACGCACCCTGGAAAGGAATAAGCATTAGGACCATAGAGGACGCTCTAGGACTAATGCTCATCGGAAAATGACTAGGGGTGCTGGCATCCCTATGTTCTTTTTTCAGATGGGAAACGTTCCCCCCAAGGCAAAAACGCCCCTAAGATGTATTCTGGAGAATTNGGNCCAGTTTGACCCTCAGACGCTAAGAAAGAAACGACTTATATTCTTCTGCAGTACCGCCTGGCCACGATATCCTCTTCAAGGGGGAGAAACCTGGCCTCCTGAGGGAAGTATAAATTATAACACCATCTTACAGCTAGACCTCTTTTGTAGAAAAGAAGGCAAATGGAGTGAAGTGCCATATGTACAAACTTTCTTTTCATTAAGAGACAACTCGCAATTATGTAAAAAGTGTGATTTATGCCCTACAGGAAGCCCTCAGAGTCTACCTCCCTACCCCGGCGTCCCCCCGACTCCTTCCCCAACTAATAAGGACCCCCCTTCAACCCAAACGGTCCAAAAGGAGATAGACAAAGGGGTAAACAATGAACCAAAGAGTGCCAATATTCCCCGATTATGCCCCCTCCAAGCGGTGGGAGGAGGAGAATTCGGCCCAGCCAGAGTGCATGTACCTTTTTCCCTCTCAGACTTGAAGCAAATTAAAATAGACCTAGGTAAATTCTCAGATAACCCTGATGGCTATATTGATGTTTTACAAGGGTTAGGACAATCCTTTGATCTGACATGGAGAGATATAATGTTACTGCTAGATCAGACACTAACCCCAAATGAGAGAAGTGCCGCCATAACTGCAGCCCGAGAGTTTGGCGATCTCTGGTATCTCAGTCAGGTCAATGATAGGATGACAACAGAGGAAAGAGAACGATTCCCCACAGGCCAGCAGGCAGTTCCCAGTGTAGACCCTCACTGGGACGCAGAATCAGAACATGGAGATTGGTGCCGCAGACATTTGCTAACTTGCGTGCTAGAAGGACTAAGGAAAACTAGGAAGAAGCCTATGAATTATTCAATGATGTCCACTATAACACAGGGAAAGGAAGAAAATCCTACTGCCTTTCTGGAGAGACTAAGGGAGGCATTGAGGAAGCATACCTCTCTGTCACCTGACTCTATTGAAGGCCAACTAATCTTAAAGGATAAGTTTATCACTCAGTCAGCTGCAGACATTAGAAAAAAACTTCAAAAGTCCGCCTTAGGCCCGGAGCAAAACTTAGAAACCCTATTGAACTTGGCAACCTCGGTTTTTTATAATAGAGATCAGGAGGAGCAGGCGGAACGGGACAAACGGGATAAGAAAAAAAAAGGCCACCGCTTTAGTCATGGCCCTCAGGCAAGCGGACTTTGGAGGCTCTGGAAAAGGGAAAGGCTGGGCAAATCGAATGCCTAATAGGGCTTGCTTCCAGTGCGGTCTACAAGGACACTTTAAAAAAGATTGTCCGAATAGAAATAAGCCGCCCCCTCGTCCATGCCCCTTATGTCAAGGGAATCACTGGAAGGCCCACTGCCCCAGGGGACGAAGGTCCTCTGAGTCAGAAGCCACTAACCAGATGATCCAGCAGCAGGACTGAGGGTGCCCGGGGCAAGCGCCAGCCCATGCCATCACCCTCACAGAGCCCCGGGTATGCTTGACCATTGAGGGCCAGGAGGTTAACTGTCTCCTGGACACTGGCGCGGCCTTCTCAGTCTTACTCTCCTGTCCCGGACAACTGTCCTCCAGATCTGTCACTATCCGAGGGGTCCTAGGACAGCCAGTCACTAGATACTTCTCCCAGCCACTAAGTTGTGACTGGGGAACTTTACTCTTTTCACATGCCTTTCTAATTATGCCTGAAAGCCCCACTCCCTTGTTAGGGAGAGACATTCTAGCAAAAGCAGGGGCCATTATACACCTGAACATAGGAGAAGGAACACCCGTTTGTTGTCCCCTGCTTGAGGAAGGAATTAATCCTGAAGTCTGGGCAACAGAAGGACAATATGGACGAGCAAAGAATGCCCGTCCTGTTCAAGTTAAACTAAAGGATTCCGCCTCCTTTCCCTACCAAAGGCAGTACCCCCTTAGACCCGAGGCCCAACAAGGACTCCAAAAGATTGTTAAGGACCTAAAAGCCCAAGGCCTAGTAAAACCATGCAATAGCCCCTGCAATACTCCAATTTTAGGAGTACAGAAACCCAACGGACAGTGGAGGTTAGTGCAAGATCTCAGGATTATCAATGAGGCCGTTGTCCCTCTATACCCAGCTGTACCTAACCCTTATACTCTGCTTTCCCAAATACCAGAGGAAGCAGAGTGGTTTACAGTCCTGGACCTTAAGGATGCCTTTTTCTGCATCCCTGTACATCCTGACTCTCAATTCTTGTTTGCCTTTGAAGATCCTTCGAACCCAACGTCTCAACTCACCTGGACTGTTTTACCCCAAGGGTTCAGGGATAGCCCCCATCTATTTGGCCAGGCATTAGCCCAAGACTTGAGCCAGTTCTCATACCTGGACACTCTTGTCCTTCGGTACGTGGATGATTTACTTTTAGCCGCCCGTTCAGAAACCTTGTGCCATCAAGCCACCCAAGCGCTCTTAAATTTCCTCGCCACCTGTGGCTACAAGGTTTCCAAACCAAAGGCTCAGCTCTGCTCACAGCAGGTTAAATACTTAGGGCTAAAATTATCCAAAGGCACCAGGGCCCTCAGTGAGGAACGTATCCAGCCTATACTGGCTTATCCTCATCCCAAAACCCTAAAGCAACTAAGAGGGTTCCTTGGCATAACAGGCTTCTGCCGAATATGGATTCCCAGGTACGGCGAAATAGCCAGGCCATTATATACACTAATTAAGGAAACTCAGAAAGCCAATACCCATTTAGTAAGATGGACACCTGAAGCAGAAGCGGCTTTCCAGGCCCTAAAGAAGGCCCTAACCCAAGCCCCAGTGTTAAGCTTGCCAACGGGGCAAGACTTTTCTTTATATGTCACAGAAAAAACAGGAATAGCTCTAGGAGTCCTTACACAGGTCCGAGGGACGAGCTTGCAACCCGTGGCATACCTGAGTAAGGAAATTGATGTAGTGGCAAAGGGTTGGCCTCATTGTTTACGGGTAGTGGCGGCAGTAGCAGTCTTAGTATCTGAAGCAGTTAAAATAATACAGGGAAGAGATCTTACTGTGTGGACATCTCATGATGTGAACGGCATACTCACTGCTAAAGGAGACTTGTGGCTGTCAGACAACCGTTTACTTAAATATCAGGCTCTATTACTTGAAGGGCCAGTGCTGCGACTGCGCACTTGTGCAACTCTTAACCCAGCCACATTTCTTCCAGACAATGAAGAAAAGATAGAACATAACTGTCAACAAGTAATTGCTCAAACCTACGCCGCTCGAGGGGACCTTCTAGAGGTTCCCTTGACTGATCCCGACCTCAACTTGTATACTGATGGAAGTTCCTTTGTAGAAAAAGGACTTCGAAAAGCGGGGTATGCAGTGGTCAGTGATAATGGAATACTTGAAAGTAATCCCCTCACTCCAGGAACTAGCGCTCAGCTGGCAGAACTAATAGCCCTCACTCGGGCACTAGAATTAGGAGAAGGAAAAAGGGTAAATATATATACAGACTCTAAGTATGCTTACCTAGTCCTCCATGCCCACGCAGCAATATGGAGAGAAAGGGAATTCCTAACTTCCGAGGGAACACCTATCAAACATCAGGAAGCCATTAGGAGATTATTATTGGCTGTACAGAAACCTAAAGAGGTGGCAGTCTTACACTGCCGGGGTCATCAGAAAGGAAAGGAAAGGGAAATAGAAGGGAACCGCCAAGCGGATATTGAAGCCAAAAGAGCCGCAAGGCGGGACCCTCCATTAGAAATGCTTATAGAAGGACCCCTAGTATGGGGTAATCCCCTCCGGGAAACCAAGCCCCAGTACTCAGCAGAAGAAATAGAATGGGGAACCTCACGAGGACATAGTTTCCTCCCCTCAGGATGGCTAGCCACCGAAGAAGGAAAAATACTTTTGCCTGCAGCTAACCAATGGAAATTACTTAAAACCCTTCACCAAACCTTTCACTTAGGCATTGATAGCACCCATCAGATGGCCAAATCATTATTTACTGGACCAGGCCTTTTCAAAACTATCAAGCAGATAGTCAGGGCCTGTGAAGTGTGCCAAAGAAATAATCCCCTGCACTTATCGCCAAGCTCCTTCAGGAGAACAAAGAACAGGCCATTACCCAGGAGAAGACTGGCAACTAGATTTTACCCACATGCCCAAATCTCAGGGATTTCAGTATCTACTAGTCTGGGTAGATACTTTCACTGGTTGGGCGGAGGCCTTCCCTTGTAGGACAGAAAAGGCCCAAGAGGTAATAAAGGCACTAGTTCATGAAATAATTCCCAGATTCGGACTTCCCCGAGGCTTACAGAGTGACAATGGCCCCGCTTTCAAGGCTGCAGTAACCCAGGGAGTATCCCAGGCGTTAGGCATACAATATCACTTACACTGCGCCTGGAGGCCACAATCCTCAGGAAAAGTCGAGAAAATGAACGAAACACTCAAACGACATCTAAAAAAGCTAACCCAGGAAACCCACCTCGCATGGCCTGCTCTGTTGCCTATAGCCTTACTAAGAATCCGAAACTCTCCCCAAAAAGCGGGACTTAGCCCATACGAAATGCTGTATGGACGGCCCTTCCTAACCAATGACCTTGTGCTTGACCGAGAGACGGCCAACTTAGTTGCAGACATCACCTCCTTAGCCAAATATCAACAAGTTCTTAAAACATTACAGGGAACCTGTCCCCGAGAGGAGGGAAAGGAATTATTCCACCCTGGTGACATGGTATTAGTCAAGTCCCTTCCCTCTAATTCCCCATCCCTAGATACATCCTGGGAAGGACCCTACCCAGTCATTTTATCTACCCCAACCGCGGTTAAAGTGGCTGGAGTGGAGTCTTGGATACATCACACTCGAGTCAAACCCTGGATACTGCCAAAGGAACCCGAAAATCCAGGAGACAACGCTAGCTATTCCTGTGAACCTCTAGAGGATCTGCGCCTGCTCTTCAAGCGACAACCGTGAGGAAAGTAACTAGAATCGTAGATCCCCATGGCCCTCCCTTGTCATATTTTTCTCTTTACTGTTCTCTTACCCCCTTTCACTCTCACTGCACCCCCTCCATGCCGCTGTACTACCAGTAGCTCCCCTTACCAAGAGCTTCTATGGAGAATGCGGCTTCCCGGAAATATTGATGCCCCATCGTATAGGAGTTTTTCTAAAGGAAACCCCACTTTCACCGCCCACACCCATATGCCCCGCAACTGCTATAACTCTGCCACTCTTTGCATGCATGCAAATACTCATTATTGGACAGGGAAAATGATTAATCCTAGTTGTCCTGGAGGACTTGGAGCCACTGTCTGTTGGACTTACTTCACCCATACCGGTATGTCTGATGGGGGTGGAGTTCAAGATCAGGCAAGAGAAAAACACGTAAAGGAAGTAATCTCCCAACTGACCCGGGTACATAGCACCCCTAGCCCCTACAAAGGACTAGATCTCTCAAAACTACATGAAACCCTCCGTACCCATACTCGCCTGGTAAGCCTATTTAATACCACCCTCACTGGGCTCCATGAGGTCTCGGCCCAAAACCCTACTAACTGTTGGATGTGCCTCCCCCTGCACTNCAGGCCATACATTTCAATCCCTGTATCTGAACAATGGAACAACTTCAGCACAGAAATAAACACCACTTCCGTTTTAGTAGGACCTCTTGTTTCCAATCTGGAAATAACCCATACCTCAAACCTCACCTGTGTAAAATTTAGCAATACTATAGACACAACCAACTCCCAATGCATCAGGTGGGTAACTCCTCCCACACGAATAGTCTGCCTACCCTCAGGAATATTTTTTGTCTGTGGTACCTCAGCCTATCGTTGTTTGAATGGCTCTTCAGAATCTATGTGCTTCCTCTCATTCTTAGTGCCCCCTATGACCATCTACACTGAACAAGATTTATACAATCATGTCGTACCTAAGCCCCGCAACAAAAGAGTACCCATTCTTCCTTTTGTTATCGGAGCAGGAGTGCTAGGCGGACTAGGTACTGGCATTGGCGGTATCACAACCTCTACTCAGTTCTACTACAAACTATCTCAAGAACTAAATGGTGACATGGAACGGGTCGCCGACTCCCTGGTCACCTTGCAAGATCAACTTAACTCCCTAGCAGCAGTAGTCCTTCAAAATCGAAGAGCTTTAGACTTGCTAACCGCCGAAAGAGGGGGAACCTGTTTATTTTTAGGGGAAGAATGCTGTTATTATGTTAATCAATCCGGAATCGTCACCGAGAAAGTTAAAGAAATTCGAGATCGAATACAACGTAGAGCAGAGGAGCTTCAAAACACCGGACCCTGGGGCCTCCTCAGCCAATGGATGCCCTGGATTCTCCCCTTCTTAGGACCTCTAGCAGCTATAATATTGTTACTCCTCTTTGGACCCTGTATCTTTAACCTCCTTGTTAAGTTTGTCTCTTCCAGAATCGAAGCTGTAAAACTACAAATCGTTCTTCAAATGGAGCCCCAGATGCAGTCCATGACTAAGATCTACCGCGGACCCCTGGACCGGCCTGCTAGCCCATGCTCCGATGTTAATGACATCGAAGGCACCCCTCCCGAGGAAATCTCAACTGCACGACCCCTACTACGCCCCAATTCAGCAGGAAGCAGTTAGAGCGGTCGTCGGCCAACCTCCCCAACAGCACTTGGGTTTTCCTGTTGAGAGGGGGATC

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
HERV17	BPC5	1021	1050	+	41.99	AGAGAGAGAGAGAAAGAGAGAAAGAGAGAG
HERV17	BPC1	1022	1045	+	37.48	GAGAGAGAGAGAAAGAGAGAAAGA
HERV17	BPC5	1019	1048	+	37.43	GAAGAGAGAGAGAGAAAGAGAGAAAGAGAG
HERV17	BPC1	1028	1051	+	36.42	GAGAGAAAGAGAGAAAGAGAGAGA
HERV17	BPC6	1001	1021	-	36.12	TTCTCTCTCTCTCTCTCTCTC
HERV17	BPC1	1024	1047	+	36.02	GAGAGAGAGAAAGAGAGAAAGAGA
HERV17	BPC1	1026	1049	+	35.82	GAGAGAGAAAGAGAGAAAGAGAGA
HERV17	BPC5	1023	1052	+	34.78	AGAGAGAGAGAAAGAGAGAAAGAGAGAGAT
HERV17	BPC1	1020	1043	+	34.03	AAGAGAGAGAGAGAAAGAGAGAAA
HERV17	BPC1	1030	1053	+	33.82	GAGAAAGAGAGAAAGAGAGAGATA

1 2 3 4 ... 352

TFBS enrichment in GRCh38

Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

GTEx

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

TCGA

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).