FordPrefect
Basic information Differential Expression Stage analysis Survival analysis Correlation analysisThe patients were classified into two groups based on the expression levels of TE families or the identification of TE-initiated transcripts. To assess the statistical difference in survival between the two groups, a log-rank test was performed. The hazard ratio (HR) and p-value were computed using the "survdiff" function from the "survival" package in R.
| Tumor | HR | P_value |
|---|---|---|
| TCGA-THYM | 10.00 | 5.00e-03 |
| TCGA-SARC | 0.50 | 9.00e-03 |
| TCGA-ESCA | 2.35 | 9.00e-03 |
| TCGA-BLCA | 0.65 | 0.01 |
| TCGA-LGG | 0.58 | 0.02 |
| TCGA-KICH | 2.71 | 0.11 |
| TCGA-GBM | 1.34 | 0.19 |
| TCGA-ACC | 0.47 | 0.19 |
| TCGA-HNSC | 1.23 | 0.21 |
| TCGA-KIRC | 0.83 | 0.27 |