FRAM
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000147 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Primates |
| Length | 176 |
| Kimura value | 13.33 |
| Tau index | 0.8646 |
| Description | FRAM (Free right Alu monomer) |
| Comment | FRAM is a SINE that derives from a single, internally-deleted 7SL RNA. |
| Sequence |
GCCGGGCGCGGTGGCNCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGGATCGCTTGAGCCCAGGAGTTCGAGGCTGCAGTGAGCTATGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACCCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| FRAM | Clamp | 126 | 139 | + | 14.45 | GACAGAGCGAGACC |
| FRAM | KLF3 | 4 | 13 | - | 14.43 | CACCGCGCCC |
| FRAM | ZNF257 | 48 | 57 | + | 14.34 | GAGGCGGGAG |
| FRAM | EREB71 | 4 | 13 | - | 14.22 | CACCGCGCCC |
| FRAM | ZNF263 | 53 | 59 | + | 13.83 | GGGAGGA |
| FRAM | GAL4 | 101 | 115 | + | 13.72 | CGCGCCACTGCACTC |
| FRAM | ZNF384 | 147 | 154 | + | 13.57 | AAAAAAAA |
| FRAM | ZNF384 | 148 | 155 | + | 13.57 | AAAAAAAA |
| FRAM | ZNF384 | 149 | 156 | + | 13.57 | AAAAAAAA |
| FRAM | ZNF384 | 150 | 157 | + | 13.57 | AAAAAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
