FRAM
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000147 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Primates |
| Length | 176 |
| Kimura value | 13.33 |
| Tau index | 0.8646 |
| Description | FRAM (Free right Alu monomer) |
| Comment | FRAM is a SINE that derives from a single, internally-deleted 7SL RNA. |
| Sequence |
GCCGGGCGCGGTGGCNCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGGATCGCTTGAGCCCAGGAGTTCGAGGCTGCAGTGAGCTATGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACCCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| FRAM | DOF3.6 | 156 | 176 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| FRAM | DOF3.6 | 146 | 166 | - | 19.33 | TTTTTTTTTTTTTTTTTTTTG |
| FRAM | ZNF213 | 114 | 125 | - | 18.09 | GCCCAGGCTGGA |
| FRAM | ZNF135 | 70 | 83 | - | 18.03 | CCTCGAACTCCTGG |
| FRAM | DOF3.6 | 145 | 165 | - | 17.41 | TTTTTTTTTTTTTTTTTTTGA |
| FRAM | ZNF135 | 38 | 51 | - | 16.04 | CCTCAGCCTCCCGA |
| FRAM | DOF5.1 | 147 | 165 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| FRAM | DOF5.1 | 148 | 166 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| FRAM | DOF5.1 | 149 | 167 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| FRAM | DOF5.1 | 150 | 168 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
