FRAM
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000147 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Primates |
| Length | 176 |
| Kimura value | 13.33 |
| Tau index | 0.8646 |
| Description | FRAM (Free right Alu monomer) |
| Comment | FRAM is a SINE that derives from a single, internally-deleted 7SL RNA. |
| Sequence |
GCCGGGCGCGGTGGCNCGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCGGGAGGATCGCTTGAGCCCAGGAGTTCGAGGCTGCAGTGAGCTATGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACCCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| FRAM | BPC1 | 151 | 174 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| FRAM | BPC1 | 152 | 175 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| FRAM | BPC1 | 153 | 176 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| FRAM | BPC1 | 146 | 169 | + | -2.03 | CAAAAAAAAAAAAAAAAAAAAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
