FLAM_C
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000144 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Primates |
| Length | 143 |
| Kimura value | 10.77 |
| Tau index | 0.8061 |
| Description | FLAM_C (Free left Alu monomer C) |
| Comment | FLAM_C is a SINE that derives from a single, internally-deleted 7SL RNA. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGAGGATCGCTTGAGCCCAGGAGTTCGAGACCAGCCTGGGCAACATAGCGAGACCCCGTCTCTAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| FLAM_C | ZNF384 | 118 | 125 | + | 13.57 | AAAAAAAA |
| FLAM_C | ZNF384 | 119 | 126 | + | 13.57 | AAAAAAAA |
| FLAM_C | ZNF384 | 120 | 127 | + | 13.57 | AAAAAAAA |
| FLAM_C | ZNF384 | 121 | 128 | + | 13.57 | AAAAAAAA |
| FLAM_C | ZNF384 | 122 | 129 | + | 13.57 | AAAAAAAA |
| FLAM_C | ZNF384 | 123 | 130 | + | 13.57 | AAAAAAAA |
| FLAM_C | ZNF384 | 124 | 131 | + | 13.57 | AAAAAAAA |
| FLAM_C | ZNF384 | 125 | 132 | + | 13.57 | AAAAAAAA |
| FLAM_C | ZNF384 | 126 | 133 | + | 13.57 | AAAAAAAA |
| FLAM_C | ZNF384 | 127 | 134 | + | 13.57 | AAAAAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
