FLAM_C
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000144 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Primates |
| Length | 143 |
| Kimura value | 10.77 |
| Tau index | 0.8061 |
| Description | FLAM_C (Free left Alu monomer C) |
| Comment | FLAM_C is a SINE that derives from a single, internally-deleted 7SL RNA. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGAGGATCGCTTGAGCCCAGGAGTTCGAGACCAGCCTGGGCAACATAGCGAGACCCCGTCTCTAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| FLAM_C | ZNF460 | 38 | 53 | - | 22.88 | GCCTCGGCCTCCCAAA |
| FLAM_C | DOF3.6 | 118 | 138 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| FLAM_C | DOF3.6 | 119 | 139 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| FLAM_C | DOF3.6 | 120 | 140 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| FLAM_C | DOF3.6 | 121 | 141 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| FLAM_C | DOF3.6 | 122 | 142 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| FLAM_C | DOF3.6 | 123 | 143 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| FLAM_C | DOF3.6 | 117 | 137 | - | 20.06 | TTTTTTTTTTTTTTTTTTTTA |
| FLAM_C | ZNF135 | 39 | 52 | - | 19.08 | CCTCGGCCTCCCAA |
| FLAM_C | DOF3.6 | 116 | 136 | - | 17.79 | TTTTTTTTTTTTTTTTTTTAG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
