FLAM_C
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000144 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Primates |
| Length | 143 |
| Kimura value | 10.77 |
| Tau index | 0.8061 |
| Description | FLAM_C (Free left Alu monomer C) |
| Comment | FLAM_C is a SINE that derives from a single, internally-deleted 7SL RNA. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGAGGATCGCTTGAGCCCAGGAGTTCGAGACCAGCCTGGGCAACATAGCGAGACCCCGTCTCTAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| FLAM_C | DOF5.1 | 125 | 143 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| FLAM_C | ZBTB6 | 63 | 71 | + | 15.31 | GCTTGAGCC |
| FLAM_C | DOF3.6 | 115 | 135 | - | 14.92 | TTTTTTTTTTTTTTTTTTAGA |
| FLAM_C | KLF3 | 5 | 14 | - | 14.43 | CACCGCGCCC |
| FLAM_C | ZNF257 | 49 | 58 | + | 14.34 | GAGGCGGGAG |
| FLAM_C | EREB71 | 5 | 14 | - | 14.22 | CACCGCGCCC |
| FLAM_C | RAV2 | 94 | 101 | + | 14.09 | GCAACATA |
| FLAM_C | ZNF770 | 42 | 49 | - | 13.95 | CGGCCTCC |
| FLAM_C | ZNF263 | 54 | 60 | + | 13.83 | GGGAGGA |
| FLAM_C | TEM1 | 94 | 101 | + | 13.75 | GCAACATA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
