FLAM_C
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000144 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Primates |
| Length | 143 |
| Kimura value | 10.77 |
| Tau index | 0.8061 |
| Description | FLAM_C (Free left Alu monomer C) |
| Comment | FLAM_C is a SINE that derives from a single, internally-deleted 7SL RNA. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGAGGATCGCTTGAGCCCAGGAGTTCGAGACCAGCCTGGGCAACATAGCGAGACCCCGTCTCTAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| FLAM_C | ZNF213 | 84 | 95 | - | 16.11 | GCCCAGGCTGGT |
| FLAM_C | ZNF135 | 71 | 84 | - | 16.03 | TCTCGAACTCCTGG |
| FLAM_C | Zfx | 44 | 53 | - | 15.70 | GCCTCGGCCT |
| FLAM_C | DOF5.1 | 118 | 136 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| FLAM_C | DOF5.1 | 119 | 137 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| FLAM_C | DOF5.1 | 120 | 138 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| FLAM_C | DOF5.1 | 121 | 139 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| FLAM_C | DOF5.1 | 122 | 140 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| FLAM_C | DOF5.1 | 123 | 141 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| FLAM_C | DOF5.1 | 124 | 142 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
