FLAM_C
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000144 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Primates |
| Length | 143 |
| Kimura value | 10.77 |
| Tau index | 0.8061 |
| Description | FLAM_C (Free left Alu monomer C) |
| Comment | FLAM_C is a SINE that derives from a single, internally-deleted 7SL RNA. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGAGGATCGCTTGAGCCCAGGAGTTCGAGACCAGCCTGGGCAACATAGCGAGACCCCGTCTCTAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| FLAM_C | nfi-1 | 91 | 105 | - | 7.17 | TCGCTATGTTGCCCA |
| FLAM_C | GLI3 | 35 | 49 | - | 2.25 | CGGCCTCCCAAAGTG |
| FLAM_C | BPC1 | 118 | 141 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| FLAM_C | BPC1 | 119 | 142 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| FLAM_C | BPC1 | 120 | 143 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
