Eutr2B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001264 |
|---|---|
| TE superfamily | MuDR |
| TE class | DNA |
| Species | Eutheria |
| Length | 1699 |
| Kimura value | 25.24 |
| Tau index | 0.0000 |
| Description | Eutr2B subfamily |
| Comment | Pos 13-125 bp of the 250-300 bp long TIRs are ~8 copies of ATTCGCCGAAARYCA. Full TIRs are shared with the shorter element named Eutr2. The remaining 1200 bp are unrelated. |
| Sequence |
GGCTCTAGGCCAATTCGCCGAAAATCAATTCGCCGAAAGCCAATTCGCCGAAAGATCAATTCGCCGAATGACCAATTCGCCGAAAGCCAATTCGCCGAAAATCAATTTGCCGAATGACCAATTCGCCGAATTTACCAAATTTACCGATTTACCAAAAACTTGTTTCTTTTAACTATTTATAAAGTTTACAGCAATTCGTATTGGATGGGATGGTTTTAACAGCTTTTGAAGATTTCTGCGAAGTTTTAGTTGACCGGTTTTCATTTTGTCTTCATAGCAGCATTTTAAGGAATGTTCAATTTGTCGAAAGCTAAGGGTCATAGGGTGGTTTAGTCTATTTNTGTTAAATATATTTAATATTCAGAAAAGTATATTTTATCATCAGTAACCAAAATTCAGCATTTCATATGGGAATTTTTCAGTTTATACTGATTTCTTTCNAATNTTTTTGAAACTTTTTATNATCCATTTTTATGCTTTTTTNAATTATTTTNAGGATTCTTTCGCCAATTTCTCAAGTAGCATATCAACCTTAGTTTGTTATTTCTAGNAATTAGTAGCCAAAATTTAATATGTGATGTGGTTGCTCCTGTCGCTTCCTAGTTCATTTTACTTACCTATCTTTTAGCATTTTTAGGATTTTTAANANTTAATTTTTGATCCTTCCTTCACAATTTCGTATTTATGGTTAATGTATATCAAATTTGAGGTACTAATCATACGGTCCATTATAGTAATCCCTTCTGGGCATCCTCACTTCCTTTCCGCTGCTTTGAACGGTTTTACCCTTTCATGTCGAATCTTTCTGCAAACTGCTACCAAGTCGACATATCCCAATTGCTCCTTGTTAGAAACCAAAATTTCAGCATTTCATATGTGACGGGATTGTTTCGGCTACTTCTGATTTCTTTCGGATGCTTTTGAATGTCATTTTCTATTTTTTCAAACTTTAANCATTTTTAGTATTCTTTCGCCAATTCCTCAAATGGCATATCAGCCTTAATTTTGTATTTCTAGCAATTAAAATTTTAAATTTCAGCATTTCACATGTGATGGGATTGTTTCGGCCGCTTTTGAGTTCTTTCGCATCCTTTTGAATGTCATTTTTNATTTTTCCAATCTTTAGGCATTTTTACCATTCTTTCACCAATGTCTCAAATGGCATATCAGCCTTAATTTTGTATTTCTAGCAATTAGTAACCAAAATTTCGGCATTTCATATTGATGTGGTTGCTCTGGATCCTTCCTCAGCAATTTCATATTTATGGTGAATGTATATCAGATTTGGGGTACTAATCTTACGCTGAAATTTTGGTTACTGATTATGAAATATACTTTTCTGAATATTAAATATATTCATAAGAAGACTAAACCACCCTATGACCCTTAGCTTTTGACAAATTGAACATTCCTTAAAATGCTGCTATGAAGACAAAATGAAAACCGGTCAACTAAAACTTCGCAGAAATCTTCAAAAGCTGTTAAAACCATCCCATCCAATACGAATTGCTGTAAACTTTATAAATAGTTAAAAGAAACAAGTTTTTGGTAAATCGGTAAATTTGGTAAATTCGGCGAATTGGTCATTCGGCGAATTGATTTTCGGCGAATTGGCTTTCGGCGAATTGGTCATTCGGCGAATTGATTTTCGGCGAATTGGCTTTCGGCGAATTGATTTTCGGCGAATTGGCCCGGAGCC
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eutr2B | EWSR1-FLI1 | 744 | 761 | - | -15.37 | GGAAGTGAGGATGCCCAG |
| Eutr2B | BCL6B | 1008 | 1024 | + | -17.26 | GTATTTCTAGCAATTAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
