Eutr2B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001264 |
|---|---|
| TE superfamily | MuDR |
| TE class | DNA |
| Species | Eutheria |
| Length | 1699 |
| Kimura value | 25.24 |
| Tau index | 0.0000 |
| Description | Eutr2B subfamily |
| Comment | Pos 13-125 bp of the 250-300 bp long TIRs are ~8 copies of ATTCGCCGAAARYCA. Full TIRs are shared with the shorter element named Eutr2. The remaining 1200 bp are unrelated. |
| Sequence |
GGCTCTAGGCCAATTCGCCGAAAATCAATTCGCCGAAAGCCAATTCGCCGAAAGATCAATTCGCCGAATGACCAATTCGCCGAAAGCCAATTCGCCGAAAATCAATTTGCCGAATGACCAATTCGCCGAATTTACCAAATTTACCGATTTACCAAAAACTTGTTTCTTTTAACTATTTATAAAGTTTACAGCAATTCGTATTGGATGGGATGGTTTTAACAGCTTTTGAAGATTTCTGCGAAGTTTTAGTTGACCGGTTTTCATTTTGTCTTCATAGCAGCATTTTAAGGAATGTTCAATTTGTCGAAAGCTAAGGGTCATAGGGTGGTTTAGTCTATTTNTGTTAAATATATTTAATATTCAGAAAAGTATATTTTATCATCAGTAACCAAAATTCAGCATTTCATATGGGAATTTTTCAGTTTATACTGATTTCTTTCNAATNTTTTTGAAACTTTTTATNATCCATTTTTATGCTTTTTTNAATTATTTTNAGGATTCTTTCGCCAATTTCTCAAGTAGCATATCAACCTTAGTTTGTTATTTCTAGNAATTAGTAGCCAAAATTTAATATGTGATGTGGTTGCTCCTGTCGCTTCCTAGTTCATTTTACTTACCTATCTTTTAGCATTTTTAGGATTTTTAANANTTAATTTTTGATCCTTCCTTCACAATTTCGTATTTATGGTTAATGTATATCAAATTTGAGGTACTAATCATACGGTCCATTATAGTAATCCCTTCTGGGCATCCTCACTTCCTTTCCGCTGCTTTGAACGGTTTTACCCTTTCATGTCGAATCTTTCTGCAAACTGCTACCAAGTCGACATATCCCAATTGCTCCTTGTTAGAAACCAAAATTTCAGCATTTCATATGTGACGGGATTGTTTCGGCTACTTCTGATTTCTTTCGGATGCTTTTGAATGTCATTTTCTATTTTTTCAAACTTTAANCATTTTTAGTATTCTTTCGCCAATTCCTCAAATGGCATATCAGCCTTAATTTTGTATTTCTAGCAATTAAAATTTTAAATTTCAGCATTTCACATGTGATGGGATTGTTTCGGCCGCTTTTGAGTTCTTTCGCATCCTTTTGAATGTCATTTTTNATTTTTCCAATCTTTAGGCATTTTTACCATTCTTTCACCAATGTCTCAAATGGCATATCAGCCTTAATTTTGTATTTCTAGCAATTAGTAACCAAAATTTCGGCATTTCATATTGATGTGGTTGCTCTGGATCCTTCCTCAGCAATTTCATATTTATGGTGAATGTATATCAGATTTGGGGTACTAATCTTACGCTGAAATTTTGGTTACTGATTATGAAATATACTTTTCTGAATATTAAATATATTCATAAGAAGACTAAACCACCCTATGACCCTTAGCTTTTGACAAATTGAACATTCCTTAAAATGCTGCTATGAAGACAAAATGAAAACCGGTCAACTAAAACTTCGCAGAAATCTTCAAAAGCTGTTAAAACCATCCCATCCAATACGAATTGCTGTAAACTTTATAAATAGTTAAAAGAAACAAGTTTTTGGTAAATCGGTAAATTTGGTAAATTCGGCGAATTGGTCATTCGGCGAATTGATTTTCGGCGAATTGGCTTTCGGCGAATTGGTCATTCGGCGAATTGATTTTCGGCGAATTGGCTTTCGGCGAATTGATTTTCGGCGAATTGGCCCGGAGCC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eutr2B | THRB | 315 | 327 | + | 13.99 | GGGTCATAGGGTG |
| Eutr2B | GT-2 | 1129 | 1139 | + | 13.97 | ATTTTTACCAT |
| Eutr2B | HHO5 | 798 | 805 | - | 13.94 | AAAGATTC |
| Eutr2B | IDD11 | 1426 | 1437 | + | 13.92 | ATGAAGACAAAA |
| Eutr2B | IDD11 | 264 | 275 | - | 13.92 | ATGAAGACAAAA |
| Eutr2B | AT2G38300 | 1405 | 1414 | + | 13.90 | AACATTCCTT |
| Eutr2B | AT2G38300 | 287 | 296 | - | 13.90 | AACATTCCTT |
| Eutr2B | NUC | 1426 | 1437 | - | 13.88 | TTTTGTCTTCAT |
| Eutr2B | NUC | 264 | 275 | + | 13.88 | TTTTGTCTTCAT |
| Eutr2B | MYB43 | 131 | 142 | + | 13.87 | TTTACCAAATTT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
