Eutr16
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001243 |
|---|---|
| TE superfamily | Tip100 |
| TE order | DNA |
| Species | Eutheria |
| Length | 760 |
| Kimura value | 31.02 |
| Tau index | 0.0000 |
| Description | Ancient interspersed repetitive sequence from eutherian mammals. |
| Comment | Limited support for DNA transposon classification. Pos 146-60 (in reverse) may be the N-terminus of a Zaphod-like transposase (AA 1-28). Absent in opossum. |
| Sequence |
CAGAGGCGGCTCTAGAGCTAGCGAGGCCCAGGCGAAAGTCATACATGAGGCAAGTTGCATTCTTCCAAAGTCGCCCGCTTTTGTCTTTTTGCATAACCTGATTCAAATTTTCTGCCCTTGTCACGTTCTCTCCCGCTCGTAGACATTTTTGCGATGGGTATAACCTTATTATTTTATTATTAGTCACTAACCACGGGTAATTCACTTTTTCAATTGATCTATGTTGCTTATAAAGTGCCACATCAACTACTACTACAGTTTAGTTACCGAGTTCTGATAGCTGGCGTAAACAAACAGCTCTGTGTGANCCAGGGCGCGATCAGGGCATTGCTGAGTTCTGATTGGTTGAATTCGCTTGTGGTCCGATTGGTCCGAACGTCAGTCAGTGATGCACATTCACAAGAGTGCAGGTTGCGGTAACCGCTCTTGCAGTGAAGTAATGTTGCGCGCGTTTTATATTTTACATAGTACATAATAGTTTTTATTTGTTCTAAGTAAATATCTGACAATGTCCAGTTCAACGGATTCTGCAGATGAAATGCCCCAAAACACAATGTCTTCCTCTAAAAAAATGGCTGAAAATACGCGCACATTTATATTGTATAGTTTACGCAAACCGCACTTGTGTGAATGAAGCGGGAACATGTTCACGTGCAACGATCGAGTGTTCCGCATTCTCGTGTTAGGCCGGGAGGGTGTTTATTGTGGTCTAGCNCGAGGCCCGCGGTCTAGCGAGGCCCTTGNCCGTGCGAGGCCCTGG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eutr16 | NFYA | 338 | 345 | - | 14.54 | CCAATCAG |
| Eutr16 | ABF1 | 183 | 196 | - | 14.53 | CCGTGGTTAGTGAC |
| Eutr16 | bHLH80 | 49 | 57 | + | 14.48 | GGCAAGTTG |
| Eutr16 | CDF3 | 203 | 210 | - | 14.46 | AAAAAGTG |
| Eutr16 | RVE7L | 496 | 504 | + | 14.41 | TAAATATCT |
| Eutr16 | RVE5 | 496 | 504 | - | 14.35 | AGATATTTA |
| Eutr16 | RVE6 | 496 | 504 | - | 14.32 | AGATATTTA |
| Eutr16 | RVE8 | 496 | 504 | - | 14.29 | AGATATTTA |
| Eutr16 | bHLH130 | 50 | 57 | - | 14.26 | CAACTTGC |
| Eutr16 | FKH1 | 282 | 294 | + | 14.23 | TGGCGTAAACAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
