Eutr16
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001243 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 760 |
| Kimura value | 31.02 |
| Tau index | 0.0000 |
| Description | Ancient interspersed repetitive sequence from eutherian mammals. |
| Comment | Limited support for DNA transposon classification. Pos 146-60 (in reverse) may be the N-terminus of a Zaphod-like transposase (AA 1-28). Absent in opossum. |
| Sequence |
CAGAGGCGGCTCTAGAGCTAGCGAGGCCCAGGCGAAAGTCATACATGAGGCAAGTTGCATTCTTCCAAAGTCGCCCGCTTTTGTCTTTTTGCATAACCTGATTCAAATTTTCTGCCCTTGTCACGTTCTCTCCCGCTCGTAGACATTTTTGCGATGGGTATAACCTTATTATTTTATTATTAGTCACTAACCACGGGTAATTCACTTTTTCAATTGATCTATGTTGCTTATAAAGTGCCACATCAACTACTACTACAGTTTAGTTACCGAGTTCTGATAGCTGGCGTAAACAAACAGCTCTGTGTGANCCAGGGCGCGATCAGGGCATTGCTGAGTTCTGATTGGTTGAATTCGCTTGTGGTCCGATTGGTCCGAACGTCAGTCAGTGATGCACATTCACAAGAGTGCAGGTTGCGGTAACCGCTCTTGCAGTGAAGTAATGTTGCGCGCGTTTTATATTTTACATAGTACATAATAGTTTTTATTTGTTCTAAGTAAATATCTGACAATGTCCAGTTCAACGGATTCTGCAGATGAAATGCCCCAAAACACAATGTCTTCCTCTAAAAAAATGGCTGAAAATACGCGCACATTTATATTGTATAGTTTACGCAAACCGCACTTGTGTGAATGAAGCGGGAACATGTTCACGTGCAACGATCGAGTGTTCCGCATTCTCGTGTTAGGCCGGGAGGGTGTTTATTGTGGTCTAGCNCGAGGCCCGCGGTCTAGCGAGGCCCTTGNCCGTGCGAGGCCCTGG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eutr16 | GAF1 | 79 | 93 | - | 19.95 | TGCAAAAAGACAAAA |
| Eutr16 | IDD5 | 79 | 92 | + | 19.82 | TTTTGTCTTTTTGC |
| Eutr16 | IDD7 | 79 | 92 | - | 19.77 | GCAAAAAGACAAAA |
| Eutr16 | IDD4 | 78 | 92 | - | 19.36 | GCAAAAAGACAAAAG |
| Eutr16 | JKD | 79 | 90 | + | 19.06 | TTTTGTCTTTTT |
| Eutr16 | IDD1 | 79 | 90 | + | 18.82 | TTTTGTCTTTTT |
| Eutr16 | NUC | 79 | 90 | + | 18.38 | TTTTGTCTTTTT |
| Eutr16 | IDD11 | 79 | 90 | - | 18.31 | AAAAAGACAAAA |
| Eutr16 | SGR5 | 79 | 91 | - | 18.27 | CAAAAAGACAAAA |
| Eutr16 | IDD6 | 78 | 93 | + | 18.11 | CTTTTGTCTTTTTGCA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
