Eutr16
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001243 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 760 |
| Kimura value | 31.02 |
| Tau index | 0.0000 |
| Description | Ancient interspersed repetitive sequence from eutherian mammals. |
| Comment | Limited support for DNA transposon classification. Pos 146-60 (in reverse) may be the N-terminus of a Zaphod-like transposase (AA 1-28). Absent in opossum. |
| Sequence |
CAGAGGCGGCTCTAGAGCTAGCGAGGCCCAGGCGAAAGTCATACATGAGGCAAGTTGCATTCTTCCAAAGTCGCCCGCTTTTGTCTTTTTGCATAACCTGATTCAAATTTTCTGCCCTTGTCACGTTCTCTCCCGCTCGTAGACATTTTTGCGATGGGTATAACCTTATTATTTTATTATTAGTCACTAACCACGGGTAATTCACTTTTTCAATTGATCTATGTTGCTTATAAAGTGCCACATCAACTACTACTACAGTTTAGTTACCGAGTTCTGATAGCTGGCGTAAACAAACAGCTCTGTGTGANCCAGGGCGCGATCAGGGCATTGCTGAGTTCTGATTGGTTGAATTCGCTTGTGGTCCGATTGGTCCGAACGTCAGTCAGTGATGCACATTCACAAGAGTGCAGGTTGCGGTAACCGCTCTTGCAGTGAAGTAATGTTGCGCGCGTTTTATATTTTACATAGTACATAATAGTTTTTATTTGTTCTAAGTAAATATCTGACAATGTCCAGTTCAACGGATTCTGCAGATGAAATGCCCCAAAACACAATGTCTTCCTCTAAAAAAATGGCTGAAAATACGCGCACATTTATATTGTATAGTTTACGCAAACCGCACTTGTGTGAATGAAGCGGGAACATGTTCACGTGCAACGATCGAGTGTTCCGCATTCTCGTGTTAGGCCGGGAGGGTGTTTATTGTGGTCTAGCNCGAGGCCCGCGGTCTAGCGAGGCCCTTGNCCGTGCGAGGCCCTGG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eutr16 | BPC6 | 118 | 138 | + | -2.92 | TTGTCACGTTCTCTCCCGCTC |
| Eutr16 | E2FD | 630 | 644 | + | -3.08 | AATGAAGCGGGAACA |
| Eutr16 | E2FE | 630 | 644 | + | -3.08 | AATGAAGCGGGAACA |
| Eutr16 | ZNF410 | 465 | 480 | + | -3.89 | ATAGTACATAATAGTT |
| Eutr16 | BPC5 | 120 | 149 | - | -41.20 | AAAATGTCTACGAGCGGGAGAGAACGTGAC |
| Eutr16 | BPC5 | 102 | 131 | - | -44.13 | AGAGAACGTGACAAGGGCAGAAAATTTGAA |
| Eutr16 | BPC5 | 112 | 141 | - | -44.50 | TACGAGCGGGAGAGAACGTGACAAGGGCAG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
