Eutr16
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001243 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 760 |
| Kimura value | 31.02 |
| Tau index | 0.0000 |
| Description | Ancient interspersed repetitive sequence from eutherian mammals. |
| Comment | Limited support for DNA transposon classification. Pos 146-60 (in reverse) may be the N-terminus of a Zaphod-like transposase (AA 1-28). Absent in opossum. |
| Sequence |
CAGAGGCGGCTCTAGAGCTAGCGAGGCCCAGGCGAAAGTCATACATGAGGCAAGTTGCATTCTTCCAAAGTCGCCCGCTTTTGTCTTTTTGCATAACCTGATTCAAATTTTCTGCCCTTGTCACGTTCTCTCCCGCTCGTAGACATTTTTGCGATGGGTATAACCTTATTATTTTATTATTAGTCACTAACCACGGGTAATTCACTTTTTCAATTGATCTATGTTGCTTATAAAGTGCCACATCAACTACTACTACAGTTTAGTTACCGAGTTCTGATAGCTGGCGTAAACAAACAGCTCTGTGTGANCCAGGGCGCGATCAGGGCATTGCTGAGTTCTGATTGGTTGAATTCGCTTGTGGTCCGATTGGTCCGAACGTCAGTCAGTGATGCACATTCACAAGAGTGCAGGTTGCGGTAACCGCTCTTGCAGTGAAGTAATGTTGCGCGCGTTTTATATTTTACATAGTACATAATAGTTTTTATTTGTTCTAAGTAAATATCTGACAATGTCCAGTTCAACGGATTCTGCAGATGAAATGCCCCAAAACACAATGTCTTCCTCTAAAAAAATGGCTGAAAATACGCGCACATTTATATTGTATAGTTTACGCAAACCGCACTTGTGTGAATGAAGCGGGAACATGTTCACGTGCAACGATCGAGTGTTCCGCATTCTCGTGTTAGGCCGGGAGGGTGTTTATTGTGGTCTAGCNCGAGGCCCGCGGTCTAGCGAGGCCCTTGNCCGTGCGAGGCCCTGG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eutr16 | FOXB1 | 492 | 502 | + | 15.15 | TAAGTAAATAT |
| Eutr16 | Foxj3 | 286 | 294 | + | 15.06 | GTAAACAAA |
| Eutr16 | DOF4.2 | 80 | 90 | - | 14.89 | AAAAAGACAAA |
| Eutr16 | RVE7 | 496 | 504 | + | 14.89 | TAAATATCT |
| Eutr16 | FOXC1 | 492 | 502 | + | 14.86 | TAAGTAAATAT |
| Eutr16 | LHY | 496 | 504 | - | 14.85 | AGATATTTA |
| Eutr16 | CCA1 | 497 | 504 | + | 14.72 | AAATATCT |
| Eutr16 | ZNF214 | 322 | 334 | - | 14.70 | TCAGCAATGCCCT |
| Eutr16 | RVE1 | 496 | 504 | + | 14.61 | TAAATATCT |
| Eutr16 | PK09702.1 | 648 | 655 | - | 14.56 | GCACGTGA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
