Eutr16
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001243 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 760 |
| Kimura value | 31.02 |
| Tau index | 0.0000 |
| Description | Ancient interspersed repetitive sequence from eutherian mammals. |
| Comment | Limited support for DNA transposon classification. Pos 146-60 (in reverse) may be the N-terminus of a Zaphod-like transposase (AA 1-28). Absent in opossum. |
| Sequence |
CAGAGGCGGCTCTAGAGCTAGCGAGGCCCAGGCGAAAGTCATACATGAGGCAAGTTGCATTCTTCCAAAGTCGCCCGCTTTTGTCTTTTTGCATAACCTGATTCAAATTTTCTGCCCTTGTCACGTTCTCTCCCGCTCGTAGACATTTTTGCGATGGGTATAACCTTATTATTTTATTATTAGTCACTAACCACGGGTAATTCACTTTTTCAATTGATCTATGTTGCTTATAAAGTGCCACATCAACTACTACTACAGTTTAGTTACCGAGTTCTGATAGCTGGCGTAAACAAACAGCTCTGTGTGANCCAGGGCGCGATCAGGGCATTGCTGAGTTCTGATTGGTTGAATTCGCTTGTGGTCCGATTGGTCCGAACGTCAGTCAGTGATGCACATTCACAAGAGTGCAGGTTGCGGTAACCGCTCTTGCAGTGAAGTAATGTTGCGCGCGTTTTATATTTTACATAGTACATAATAGTTTTTATTTGTTCTAAGTAAATATCTGACAATGTCCAGTTCAACGGATTCTGCAGATGAAATGCCCCAAAACACAATGTCTTCCTCTAAAAAAATGGCTGAAAATACGCGCACATTTATATTGTATAGTTTACGCAAACCGCACTTGTGTGAATGAAGCGGGAACATGTTCACGTGCAACGATCGAGTGTTCCGCATTCTCGTGTTAGGCCGGGAGGGTGTTTATTGTGGTCTAGCNCGAGGCCCGCGGTCTAGCGAGGCCCTTGNCCGTGCGAGGCCCTGG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eutr16 | IDD6 | 78 | 93 | + | 18.11 | CTTTTGTCTTTTTGCA |
| Eutr16 | MGP | 78 | 90 | - | 17.92 | AAAAAGACAAAAG |
| Eutr16 | nfya-1 | 338 | 347 | - | 17.16 | AACCAATCAG |
| Eutr16 | DOF1.5 | 200 | 215 | - | 16.32 | AATTGAAAAAGTGAAT |
| Eutr16 | SPL8D1 | 465 | 474 | + | 16.19 | ATAGTACATA |
| Eutr16 | LRL2 | 649 | 663 | - | 15.60 | CGATCGTTGCACGTG |
| Eutr16 | Zfx | 24 | 33 | - | 15.36 | GCCTGGGCCT |
| Eutr16 | FOXF2 | 285 | 293 | + | 15.28 | CGTAAACAA |
| Eutr16 | CHES-1-like | 285 | 294 | + | 15.27 | CGTAAACAAA |
| Eutr16 | FOXN3 | 286 | 293 | + | 15.19 | GTAAACAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
