Eutr15
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001262 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 923 |
| Kimura value | 29.13 |
| Tau index | 0.0000 |
| Description | Ancient interspersed repetitive sequence from eutherian mammals. |
| Comment | 8 bp TSDs. Imperfect 15 bp TIRs. No recognized similarities to other TIRs, but pos 546-659 (faintly) match the very N-term of the Tip100 158138577_Api transposase. Absent in opossum. |
| Sequence |
CAGGGCTATTTTTGTGGGGGAATACGCCGGAACGCCGTTCCGGAACCTCTTTCTCAGAATTACGCAAGCCGGAACGGCATTCCGGAACCTCGTTTTTAACAGACGTCAGTCGCCGGTATAACGAAACACACGCTATATACCGATGAAATTTAATGTTCAAATCAAATAATAAAATATGTTTATTTATACGCATTTTTATATCTCCCTATATAATAAAAGGAATCGTATTTTCGTCAGATGCTTTTCTTAAGTCAGTGCGCAACTCCCTCCCACTTCTCCTGGGTCTGATGTGAGGCCAGCCCGTTTCACAGTCGACACCACTGGGGAAATACCGGGAGAGAGGAAGGAGAAGGGGAAGCGGCGGATTTAGTATTTATTAGTTTGTGATACTATGTAGCTAAATGGTAACTCTACCGCGCCGTTCCCCCCAACTCCTCCTGGGTCTGGGGGAAGAGGGACGCATGGAAATGGCAAATAGAAGGAGCTGAATATAATTCATTCGCGGGCATGTAGGGCGACTCCTTCGTCNCCTCTTCCTTACAAAATACATCGAGTCGTGGATACTGCGAGGGCGTCACTCTGCTNTCGACACTAACAGTAAAGAGAGAACCAGGGACGCGGATTACGATGAGAACATGGTCAAGGTGTGGAGTTTCTTGTAGGTAATACTTTTCTGTTTCGTTTTATGAGAAAATATAGGTATTGTGTTAAGAAATTAAATAGTTTATATATTTTGAACCCTCATTAATAGATATTAAATGTTATTTATTAAAATGCTAATAATTCATTAGGTTTTTAAAATTAAACATCGAACCTCTAACAAATTAAATTTAAATAATTAAGTCTAATATTAATGGAGAGGGATCGCGGGGAGGAAGTGCGTTCCGGAACCTATTTTTTTTTTTTTAACAAAAAGAGCACTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eutr15 | ELF1 | 872 | 880 | + | 13.60 | GAGGAAGTG |
| Eutr15 | ZNF384 | 895 | 902 | - | 13.57 | AAAAAAAA |
| Eutr15 | ZNF384 | 896 | 903 | - | 13.57 | AAAAAAAA |
| Eutr15 | ZNF384 | 897 | 904 | - | 13.57 | AAAAAAAA |
| Eutr15 | ZNF384 | 898 | 905 | - | 13.57 | AAAAAAAA |
| Eutr15 | ZNF384 | 899 | 906 | - | 13.57 | AAAAAAAA |
| Eutr15 | ZNF384 | 900 | 907 | - | 13.57 | AAAAAAAA |
| Eutr15 | Ets98B | 67 | 75 | + | 13.56 | AGCCGGAAC |
| Eutr15 | Lhx3 | 713 | 724 | + | 13.54 | AAATTAAATAGT |
| Eutr15 | Spi1 | 349 | 361 | + | 13.51 | GAAGGGGAAGCGG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
