Eutr15
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001262 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 923 |
| Kimura value | 29.13 |
| Tau index | 0.0000 |
| Description | Ancient interspersed repetitive sequence from eutherian mammals. |
| Comment | 8 bp TSDs. Imperfect 15 bp TIRs. No recognized similarities to other TIRs, but pos 546-659 (faintly) match the very N-term of the Tip100 158138577_Api transposase. Absent in opossum. |
| Sequence |
CAGGGCTATTTTTGTGGGGGAATACGCCGGAACGCCGTTCCGGAACCTCTTTCTCAGAATTACGCAAGCCGGAACGGCATTCCGGAACCTCGTTTTTAACAGACGTCAGTCGCCGGTATAACGAAACACACGCTATATACCGATGAAATTTAATGTTCAAATCAAATAATAAAATATGTTTATTTATACGCATTTTTATATCTCCCTATATAATAAAAGGAATCGTATTTTCGTCAGATGCTTTTCTTAAGTCAGTGCGCAACTCCCTCCCACTTCTCCTGGGTCTGATGTGAGGCCAGCCCGTTTCACAGTCGACACCACTGGGGAAATACCGGGAGAGAGGAAGGAGAAGGGGAAGCGGCGGATTTAGTATTTATTAGTTTGTGATACTATGTAGCTAAATGGTAACTCTACCGCGCCGTTCCCCCCAACTCCTCCTGGGTCTGGGGGAAGAGGGACGCATGGAAATGGCAAATAGAAGGAGCTGAATATAATTCATTCGCGGGCATGTAGGGCGACTCCTTCGTCNCCTCTTCCTTACAAAATACATCGAGTCGTGGATACTGCGAGGGCGTCACTCTGCTNTCGACACTAACAGTAAAGAGAGAACCAGGGACGCGGATTACGATGAGAACATGGTCAAGGTGTGGAGTTTCTTGTAGGTAATACTTTTCTGTTTCGTTTTATGAGAAAATATAGGTATTGTGTTAAGAAATTAAATAGTTTATATATTTTGAACCCTCATTAATAGATATTAAATGTTATTTATTAAAATGCTAATAATTCATTAGGTTTTTAAAATTAAACATCGAACCTCTAACAAATTAAATTTAAATAATTAAGTCTAATATTAATGGAGAGGGATCGCGGGGAGGAAGTGCGTTCCGGAACCTATTTTTTTTTTTTTAACAAAAAGAGCACTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eutr15 | Stat2 | 671 | 680 | - | 17.16 | GAAACAGAAA |
| Eutr15 | dmrt99B | 386 | 398 | + | 16.40 | GATACTATGTAGC |
| Eutr15 | DREB2G | 351 | 364 | + | 15.94 | AGGGGAAGCGGCGG |
| Eutr15 | CG7928 | 609 | 620 | - | 15.90 | CGCGTCCCTGGT |
| Eutr15 | EGR4 | 565 | 575 | - | 15.87 | ACGCCCTCGCA |
| Eutr15 | Stat92E | 50 | 61 | - | 15.13 | AATTCTGAGAAA |
| Eutr15 | SPIB | 869 | 881 | - | 14.85 | GCACTTCCTCCCC |
| Eutr15 | fd59A | 177 | 186 | - | 14.83 | TAAATAAACA |
| Eutr15 | MEF2C | 5 | 15 | - | 14.76 | ACAAAAATAGC |
| Eutr15 | Gsx | 747 | 766 | - | 14.52 | AATAACATTTAATATCTATT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
