Eutr15
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001262 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 923 |
| Kimura value | 29.13 |
| Tau index | 0.0000 |
| Description | Ancient interspersed repetitive sequence from eutherian mammals. |
| Comment | 8 bp TSDs. Imperfect 15 bp TIRs. No recognized similarities to other TIRs, but pos 546-659 (faintly) match the very N-term of the Tip100 158138577_Api transposase. Absent in opossum. |
| Sequence |
CAGGGCTATTTTTGTGGGGGAATACGCCGGAACGCCGTTCCGGAACCTCTTTCTCAGAATTACGCAAGCCGGAACGGCATTCCGGAACCTCGTTTTTAACAGACGTCAGTCGCCGGTATAACGAAACACACGCTATATACCGATGAAATTTAATGTTCAAATCAAATAATAAAATATGTTTATTTATACGCATTTTTATATCTCCCTATATAATAAAAGGAATCGTATTTTCGTCAGATGCTTTTCTTAAGTCAGTGCGCAACTCCCTCCCACTTCTCCTGGGTCTGATGTGAGGCCAGCCCGTTTCACAGTCGACACCACTGGGGAAATACCGGGAGAGAGGAAGGAGAAGGGGAAGCGGCGGATTTAGTATTTATTAGTTTGTGATACTATGTAGCTAAATGGTAACTCTACCGCGCCGTTCCCCCCAACTCCTCCTGGGTCTGGGGGAAGAGGGACGCATGGAAATGGCAAATAGAAGGAGCTGAATATAATTCATTCGCGGGCATGTAGGGCGACTCCTTCGTCNCCTCTTCCTTACAAAATACATCGAGTCGTGGATACTGCGAGGGCGTCACTCTGCTNTCGACACTAACAGTAAAGAGAGAACCAGGGACGCGGATTACGATGAGAACATGGTCAAGGTGTGGAGTTTCTTGTAGGTAATACTTTTCTGTTTCGTTTTATGAGAAAATATAGGTATTGTGTTAAGAAATTAAATAGTTTATATATTTTGAACCCTCATTAATAGATATTAAATGTTATTTATTAAAATGCTAATAATTCATTAGGTTTTTAAAATTAAACATCGAACCTCTAACAAATTAAATTTAAATAATTAAGTCTAATATTAATGGAGAGGGATCGCGGGGAGGAAGTGCGTTCCGGAACCTATTTTTTTTTTTTTAACAAAAAGAGCACTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eutr15 | SOL1 | 822 | 836 | + | 13.90 | AAATTAAATTTAAAT |
| Eutr15 | Stat5b | 51 | 59 | + | 13.85 | TTCTCAGAA |
| Eutr15 | ZNF263 | 870 | 876 | + | 13.83 | GGGAGGA |
| Eutr15 | HOXC13 | 682 | 690 | - | 13.76 | CTCATAAAA |
| Eutr15 | CDF5 | 665 | 685 | + | 13.76 | AATACTTTTCTGTTTCGTTTT |
| Eutr15 | PHOX2B | 159 | 170 | + | 13.74 | AAATCAAATAAT |
| Eutr15 | FOXD2 | 177 | 187 | - | 13.73 | ATAAATAAACA |
| Eutr15 | INSM1 | 441 | 452 | + | 13.70 | GGTCTGGGGGAA |
| Eutr15 | PRDM9 | 351 | 370 | + | 13.67 | AGGGGAAGCGGCGGATTTAG |
| Eutr15 | ERF118 | 357 | 364 | - | 13.65 | CCGCCGCT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
