Eutr15
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001262 |
|---|---|
| TE superfamily | Tip100 |
| TE order | DNA |
| Species | Eutheria |
| Length | 923 |
| Kimura value | 29.13 |
| Tau index | 0.0000 |
| Description | Ancient interspersed repetitive sequence from eutherian mammals. |
| Comment | 8 bp TSDs. Imperfect 15 bp TIRs. No recognized similarities to other TIRs, but pos 546-659 (faintly) match the very N-term of the Tip100 158138577_Api transposase. Absent in opossum. |
| Sequence |
CAGGGCTATTTTTGTGGGGGAATACGCCGGAACGCCGTTCCGGAACCTCTTTCTCAGAATTACGCAAGCCGGAACGGCATTCCGGAACCTCGTTTTTAACAGACGTCAGTCGCCGGTATAACGAAACACACGCTATATACCGATGAAATTTAATGTTCAAATCAAATAATAAAATATGTTTATTTATACGCATTTTTATATCTCCCTATATAATAAAAGGAATCGTATTTTCGTCAGATGCTTTTCTTAAGTCAGTGCGCAACTCCCTCCCACTTCTCCTGGGTCTGATGTGAGGCCAGCCCGTTTCACAGTCGACACCACTGGGGAAATACCGGGAGAGAGGAAGGAGAAGGGGAAGCGGCGGATTTAGTATTTATTAGTTTGTGATACTATGTAGCTAAATGGTAACTCTACCGCGCCGTTCCCCCCAACTCCTCCTGGGTCTGGGGGAAGAGGGACGCATGGAAATGGCAAATAGAAGGAGCTGAATATAATTCATTCGCGGGCATGTAGGGCGACTCCTTCGTCNCCTCTTCCTTACAAAATACATCGAGTCGTGGATACTGCGAGGGCGTCACTCTGCTNTCGACACTAACAGTAAAGAGAGAACCAGGGACGCGGATTACGATGAGAACATGGTCAAGGTGTGGAGTTTCTTGTAGGTAATACTTTTCTGTTTCGTTTTATGAGAAAATATAGGTATTGTGTTAAGAAATTAAATAGTTTATATATTTTGAACCCTCATTAATAGATATTAAATGTTATTTATTAAAATGCTAATAATTCATTAGGTTTTTAAAATTAAACATCGAACCTCTAACAAATTAAATTTAAATAATTAAGTCTAATATTAATGGAGAGGGATCGCGGGGAGGAAGTGCGTTCCGGAACCTATTTTTTTTTTTTTAACAAAAAGAGCACTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eutr15 | TCX2 | 822 | 836 | + | 14.36 | AAATTAAATTTAAAT |
| Eutr15 | Trl | 601 | 609 | + | 14.34 | AAGAGAGAA |
| Eutr15 | AT3G10030 | 96 | 103 | + | 14.25 | TTAACAGA |
| Eutr15 | ZFP14 | 36 | 50 | - | 14.20 | AGAGGTTCCGGAACG |
| Eutr15 | PK02532.1 | 750 | 757 | - | 14.19 | TAATATCT |
| Eutr15 | ELF3 | 872 | 880 | - | 14.16 | CACTTCCTC |
| Eutr15 | EHF | 872 | 880 | - | 14.15 | CACTTCCTC |
| Eutr15 | ROX1 | 605 | 616 | - | 14.10 | TCCCTGGTTCTC |
| Eutr15 | FOXD3 | 177 | 190 | - | 13.97 | CGTATAAATAAACA |
| Eutr15 | RIN | 6 | 15 | + | 13.93 | CTATTTTTGT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
