Eutr11
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001164 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Eutheria |
| Length | 857 |
| Kimura value | 27.38 |
| Tau index | 0.0000 |
| Description | Ancient interspersed repetitive sequence from eutherian mammals. |
| Comment | 24 bp TIRs, so likely a DNA transposon, but no obvious TSDs and TIRs do not match other DNA transposon ends yet. The element carries about 2.5 tandem copies of a 146 bp unit from pos 250-618. Present at orthologous sites in elephants and humans, absent in opossum. |
| Sequence |
CAGGACGTTTTGACCCCGCCGTTTTGACCCCGAGGACGTTTTGACTCCGTGTTTATGAATACAAACATTTTAATCAGAATTATACCAACATTGATGAATTTTCGTCGAGAAAGTATTTTCCGGAGCGAACTCCATTAAGCCAATTTAATTCCTTGATCAATTTTCTATACAGCGCAGTTAAACCATTTCCANTTTTTCCCATTTTTATTTTATTTTACTGAAATTATTTTCATTTGATTCATTGATCTCATTTTTTGTCCATATCAAATTTTACCGATTATAGCTTCTGCCATTGTGAGTTTTCTTTTGTGGCCATTATTTCTACCAAGTCCAATTTTCCCGGGTCAAATTTTGCAGATCTAAATTTTGTCAAGAAGATTTGATTCTTCCGTCAATTTTTAGTCAATAACAAATTTTACCGTGTGCAGTTTTAGCCGTTGTCAGTTTTATTTTGTGTTGATTATTTCTACCAAGTCTAATTTTTCCCGGGTCAATTTTTGCAGTTTTCAATNTTACCAACAAGATGTGATTCTTCAGTCAGTTTTTCGTCTATAACAAATTTTACCGTGTGCAGTTTTAGCCATTGTCAGTTTTATTTTGTGTTGATTATTTCTACCAGTAATATTCATTATGAATTGGATAAAAGACTGATAGTTTGTATTTATTTCTTAGCTAATCCATGAGAAAATTGTGAGCAATTCCCCTCAGATATTCCAGGATTGCTCTATTGTCCAGGATTGGTCTATTGTATTGCTAATCCAATTCTTCCGTATACTTCTGATCACTTTGCGTACTGCGTACTAACTGTCCGCGCCGTTGGCGGAGCAAAGAGCAAACGGCGGGGTCAAAATGTTCTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eutr11 | REV | 621 | 634 | + | 13.39 | AATATTCATTATGA |
| Eutr11 | Sox14 | 723 | 733 | + | 13.36 | CTCTATTGTCC |
| Eutr11 | PRDM1 | 107 | 113 | - | 13.28 | CTTTCTC |
| Eutr11 | Hmga1 | 201 | 208 | + | 13.22 | ATTTTTAT |
| Eutr11 | RELB | 698 | 704 | + | 13.14 | ATTCCCC |
| Eutr11 | PC-MYB1 | 432 | 440 | + | 13.11 | TAGCCGTTG |
| Eutr11 | LEU3 | 814 | 823 | + | 13.07 | CCGTTGGCGG |
| Eutr11 | TCF7L1 | 827 | 838 | + | 13.03 | AAAGAGCAAACG |
| Eutr11 | ZNF680 | 370 | 380 | + | 13.01 | TCAAGAAGATT |
| Eutr11 | br | 403 | 414 | + | 13.01 | TCAATAACAAAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
