Eutr11
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001164 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Eutheria |
| Length | 857 |
| Kimura value | 27.38 |
| Tau index | 0.0000 |
| Description | Ancient interspersed repetitive sequence from eutherian mammals. |
| Comment | 24 bp TIRs, so likely a DNA transposon, but no obvious TSDs and TIRs do not match other DNA transposon ends yet. The element carries about 2.5 tandem copies of a 146 bp unit from pos 250-618. Present at orthologous sites in elephants and humans, absent in opossum. |
| Sequence |
CAGGACGTTTTGACCCCGCCGTTTTGACCCCGAGGACGTTTTGACTCCGTGTTTATGAATACAAACATTTTAATCAGAATTATACCAACATTGATGAATTTTCGTCGAGAAAGTATTTTCCGGAGCGAACTCCATTAAGCCAATTTAATTCCTTGATCAATTTTCTATACAGCGCAGTTAAACCATTTCCANTTTTTCCCATTTTTATTTTATTTTACTGAAATTATTTTCATTTGATTCATTGATCTCATTTTTTGTCCATATCAAATTTTACCGATTATAGCTTCTGCCATTGTGAGTTTTCTTTTGTGGCCATTATTTCTACCAAGTCCAATTTTCCCGGGTCAAATTTTGCAGATCTAAATTTTGTCAAGAAGATTTGATTCTTCCGTCAATTTTTAGTCAATAACAAATTTTACCGTGTGCAGTTTTAGCCGTTGTCAGTTTTATTTTGTGTTGATTATTTCTACCAAGTCTAATTTTTCCCGGGTCAATTTTTGCAGTTTTCAATNTTACCAACAAGATGTGATTCTTCAGTCAGTTTTTCGTCTATAACAAATTTTACCGTGTGCAGTTTTAGCCATTGTCAGTTTTATTTTGTGTTGATTATTTCTACCAGTAATATTCATTATGAATTGGATAAAAGACTGATAGTTTGTATTTATTTCTTAGCTAATCCATGAGAAAATTGTGAGCAATTCCCCTCAGATATTCCAGGATTGCTCTATTGTCCAGGATTGGTCTATTGTATTGCTAATCCAATTCTTCCGTATACTTCTGATCACTTTGCGTACTGCGTACTAACTGTCCGCGCCGTTGGCGGAGCAAAGAGCAAACGGCGGGGTCAAAATGTTCTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eutr11 | NDT80 | 305 | 313 | - | 15.46 | GCCACAAAA |
| Eutr11 | GATA6 | 356 | 365 | + | 15.09 | AGATCTAAAT |
| Eutr11 | MYB3R4 | 429 | 440 | + | 14.92 | TTTTAGCCGTTG |
| Eutr11 | NAC094 | 17 | 32 | + | 14.59 | CGCCGTTTTGACCCCG |
| Eutr11 | AP1 | 196 | 208 | - | 14.44 | ATAAAAATGGGAA |
| Eutr11 | GATA11 | 355 | 362 | - | 14.43 | TAGATCTG |
| Eutr11 | GATA1 | 356 | 365 | + | 14.36 | AGATCTAAAT |
| Eutr11 | GATA10 | 355 | 362 | - | 14.28 | TAGATCTG |
| Eutr11 | MYB3R5 | 427 | 440 | + | 14.18 | AGTTTTAGCCGTTG |
| Eutr11 | AT1G74840 | 635 | 643 | + | 14.11 | ATTGGATAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
