Eutr11
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001164 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Eutheria |
| Length | 857 |
| Kimura value | 27.38 |
| Tau index | 0.0000 |
| Description | Ancient interspersed repetitive sequence from eutherian mammals. |
| Comment | 24 bp TIRs, so likely a DNA transposon, but no obvious TSDs and TIRs do not match other DNA transposon ends yet. The element carries about 2.5 tandem copies of a 146 bp unit from pos 250-618. Present at orthologous sites in elephants and humans, absent in opossum. |
| Sequence |
CAGGACGTTTTGACCCCGCCGTTTTGACCCCGAGGACGTTTTGACTCCGTGTTTATGAATACAAACATTTTAATCAGAATTATACCAACATTGATGAATTTTCGTCGAGAAAGTATTTTCCGGAGCGAACTCCATTAAGCCAATTTAATTCCTTGATCAATTTTCTATACAGCGCAGTTAAACCATTTCCANTTTTTCCCATTTTTATTTTATTTTACTGAAATTATTTTCATTTGATTCATTGATCTCATTTTTTGTCCATATCAAATTTTACCGATTATAGCTTCTGCCATTGTGAGTTTTCTTTTGTGGCCATTATTTCTACCAAGTCCAATTTTCCCGGGTCAAATTTTGCAGATCTAAATTTTGTCAAGAAGATTTGATTCTTCCGTCAATTTTTAGTCAATAACAAATTTTACCGTGTGCAGTTTTAGCCGTTGTCAGTTTTATTTTGTGTTGATTATTTCTACCAAGTCTAATTTTTCCCGGGTCAATTTTTGCAGTTTTCAATNTTACCAACAAGATGTGATTCTTCAGTCAGTTTTTCGTCTATAACAAATTTTACCGTGTGCAGTTTTAGCCATTGTCAGTTTTATTTTGTGTTGATTATTTCTACCAGTAATATTCATTATGAATTGGATAAAAGACTGATAGTTTGTATTTATTTCTTAGCTAATCCATGAGAAAATTGTGAGCAATTCCCCTCAGATATTCCAGGATTGCTCTATTGTCCAGGATTGGTCTATTGTATTGCTAATCCAATTCTTCCGTATACTTCTGATCACTTTGCGTACTGCGTACTAACTGTCCGCGCCGTTGGCGGAGCAAAGAGCAAACGGCGGGGTCAAAATGTTCTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eutr11 | phol | 17 | 26 | + | 2.41 | CGCCGTTTTG |
| Eutr11 | Rarg | 3 | 17 | - | 1.77 | GGGGTCAAAACGTCC |
| Eutr11 | RXRG | 341 | 354 | + | 1.62 | CGGGTCAAATTTTG |
| Eutr11 | RXRB | 341 | 354 | + | 0.51 | CGGGTCAAATTTTG |
| Eutr11 | Rarg | 17 | 31 | - | -1.17 | GGGGTCAAAACGGCG |
| Eutr11 | Nr2F6 | 3 | 17 | - | -1.37 | GGGGTCAAAACGTCC |
| Eutr11 | Nr2F6 | 17 | 31 | - | -6.73 | GGGGTCAAAACGGCG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
