Eutr11
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001164 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Eutheria |
| Length | 857 |
| Kimura value | 27.38 |
| Tau index | 0.0000 |
| Description | Ancient interspersed repetitive sequence from eutherian mammals. |
| Comment | 24 bp TIRs, so likely a DNA transposon, but no obvious TSDs and TIRs do not match other DNA transposon ends yet. The element carries about 2.5 tandem copies of a 146 bp unit from pos 250-618. Present at orthologous sites in elephants and humans, absent in opossum. |
| Sequence |
CAGGACGTTTTGACCCCGCCGTTTTGACCCCGAGGACGTTTTGACTCCGTGTTTATGAATACAAACATTTTAATCAGAATTATACCAACATTGATGAATTTTCGTCGAGAAAGTATTTTCCGGAGCGAACTCCATTAAGCCAATTTAATTCCTTGATCAATTTTCTATACAGCGCAGTTAAACCATTTCCANTTTTTCCCATTTTTATTTTATTTTACTGAAATTATTTTCATTTGATTCATTGATCTCATTTTTTGTCCATATCAAATTTTACCGATTATAGCTTCTGCCATTGTGAGTTTTCTTTTGTGGCCATTATTTCTACCAAGTCCAATTTTCCCGGGTCAAATTTTGCAGATCTAAATTTTGTCAAGAAGATTTGATTCTTCCGTCAATTTTTAGTCAATAACAAATTTTACCGTGTGCAGTTTTAGCCGTTGTCAGTTTTATTTTGTGTTGATTATTTCTACCAAGTCTAATTTTTCCCGGGTCAATTTTTGCAGTTTTCAATNTTACCAACAAGATGTGATTCTTCAGTCAGTTTTTCGTCTATAACAAATTTTACCGTGTGCAGTTTTAGCCATTGTCAGTTTTATTTTGTGTTGATTATTTCTACCAGTAATATTCATTATGAATTGGATAAAAGACTGATAGTTTGTATTTATTTCTTAGCTAATCCATGAGAAAATTGTGAGCAATTCCCCTCAGATATTCCAGGATTGCTCTATTGTCCAGGATTGGTCTATTGTATTGCTAATCCAATTCTTCCGTATACTTCTGATCACTTTGCGTACTGCGTACTAACTGTCCGCGCCGTTGGCGGAGCAAAGAGCAAACGGCGGGGTCAAAATGTTCTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eutr11 | WRKY1 | 10 | 19 | + | 13.79 | TTGACCCCGC |
| Eutr11 | WRKY1 | 839 | 848 | - | 13.79 | TTGACCCCGC |
| Eutr11 | MYB77 | 801 | 809 | - | 13.78 | GACAGTTAG |
| Eutr11 | Zm00001d027846 | 300 | 307 | - | 13.75 | AAAGAAAA |
| Eutr11 | GATA14 | 355 | 362 | - | 13.62 | TAGATCTG |
| Eutr11 | DPRX | 671 | 679 | + | 13.58 | AGCTAATCC |
| Eutr11 | GT-2 | 412 | 422 | + | 13.53 | AATTTTACCGT |
| Eutr11 | GT-2 | 558 | 568 | + | 13.53 | AATTTTACCGT |
| Eutr11 | D1 | 205 | 212 | - | 13.51 | TAAAATAA |
| Eutr11 | D1 | 210 | 217 | - | 13.51 | TAAAATAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
