EuthAT-N1a
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001194 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 258 |
| Kimura value | 28.43 |
| Tau index | 0.0000 |
| Description | hAT-Tip100 DNA transposon, EuthAT-N1a subfamily |
| Comment | - |
| Sequence |
CAGAGCTGTAACTAGGGCGGGGCGACCGGGGCTTTGCCCCAGGGCACCGAAATTTAGAGGGCGCAAANATTTTAAATAATGATTTTAAAAGCTTAGCACCTAGTTAGCAAGAATAATTAGTTAAAATAGGAAGCTACCAGATGGCGCGCATTGTTAATAACACCCATCTGTGAGCCACATCATGAATTACAAAGTTGATTTGAGGGCGCGTTTCGTGCTGCTTGCCCCGGGCGCCAAAATTGCTAGTTACGGCTCTGC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| EuthAT-N1a | pdm3 | 113 | 120 | - | 13.86 | CTAATTAT |
| EuthAT-N1a | efl-1 | 230 | 239 | + | 13.84 | GGCGCCAAAA |
| EuthAT-N1a | lin-32 | 164 | 171 | - | 13.81 | ACAGATGG |
| EuthAT-N1a | EBF1 | 36 | 46 | + | 13.71 | GCCCCAGGGCA |
| EuthAT-N1a | TFAP2E | 224 | 232 | + | 13.59 | GCCCCGGGC |
| EuthAT-N1a | Ebf4 | 36 | 46 | + | 13.57 | GCCCCAGGGCA |
| EuthAT-N1a | TFAP2E | 224 | 232 | - | 13.55 | GCCCGGGGC |
| EuthAT-N1a | KLF2 | 15 | 22 | - | 13.55 | CCCCGCCC |
| EuthAT-N1a | knrl | 9 | 19 | + | 13.54 | TAACTAGGGCG |
| EuthAT-N1a | Dmrt1 | 188 | 196 | + | 13.53 | TACAAAGTT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
