EuthAT-N1a
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001194 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 258 |
| Kimura value | 28.43 |
| Tau index | 0.0000 |
| Description | hAT-Tip100 DNA transposon, EuthAT-N1a subfamily |
| Comment | - |
| Sequence |
CAGAGCTGTAACTAGGGCGGGGCGACCGGGGCTTTGCCCCAGGGCACCGAAATTTAGAGGGCGCAAANATTTTAAATAATGATTTTAAAAGCTTAGCACCTAGTTAGCAAGAATAATTAGTTAAAATAGGAAGCTACCAGATGGCGCGCATTGTTAATAACACCCATCTGTGAGCCACATCATGAATTACAAAGTTGATTTGAGGGCGCGTTTCGTGCTGCTTGCCCCGGGCGCCAAAATTGCTAGTTACGGCTCTGC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| EuthAT-N1a | ZNF417 | 230 | 236 | + | 14.55 | GGCGCCA |
| EuthAT-N1a | REV | 74 | 87 | - | 14.46 | TAAAATCATTATTT |
| EuthAT-N1a | TBXT | 158 | 173 | - | 14.44 | TCACAGATGGGTGTTA |
| EuthAT-N1a | luna | 15 | 23 | - | 14.21 | GCCCCGCCC |
| EuthAT-N1a | ZBED4 | 17 | 26 | - | 14.19 | GTCGCCCCGC |
| EuthAT-N1a | TBX19 | 157 | 173 | - | 14.17 | TCACAGATGGGTGTTAT |
| EuthAT-N1a | KLF10 | 14 | 22 | + | 14.15 | AGGGCGGGG |
| EuthAT-N1a | Spps | 13 | 23 | - | 14.02 | GCCCCGCCCTA |
| EuthAT-N1a | TBX19 | 158 | 174 | + | 13.99 | TAACACCCATCTGTGAG |
| EuthAT-N1a | ZHD9 | 114 | 128 | - | 13.96 | TATTTTAACTAATTA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
