EuthAT-N1a
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001194 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 258 |
| Kimura value | 28.43 |
| Tau index | 0.0000 |
| Description | hAT-Tip100 DNA transposon, EuthAT-N1a subfamily |
| Comment | - |
| Sequence |
CAGAGCTGTAACTAGGGCGGGGCGACCGGGGCTTTGCCCCAGGGCACCGAAATTTAGAGGGCGCAAANATTTTAAATAATGATTTTAAAAGCTTAGCACCTAGTTAGCAAGAATAATTAGTTAAAATAGGAAGCTACCAGATGGCGCGCATTGTTAATAACACCCATCTGTGAGCCACATCATGAATTACAAAGTTGATTTGAGGGCGCGTTTCGTGCTGCTTGCCCCGGGCGCCAAAATTGCTAGTTACGGCTCTGC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| EuthAT-N1a | ATF6 | 173 | 185 | - | 6.18 | TCATGATGTGGCT |
| EuthAT-N1a | BZIP44 | 173 | 185 | - | 6.17 | TCATGATGTGGCT |
| EuthAT-N1a | KLF13 | 156 | 172 | + | 4.98 | AATAACACCCATCTGTG |
| EuthAT-N1a | DOF4.3 | 190 | 202 | + | 4.02 | CAAAGTTGATTTG |
| EuthAT-N1a | phol | 137 | 146 | - | 3.28 | CGCCATCTGG |
| EuthAT-N1a | ESR1 | 14 | 28 | + | 2.68 | AGGGCGGGGCGACCG |
| EuthAT-N1a | ESR1 | 14 | 28 | - | 1.74 | CGGTCGCCCCGCCCT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
