EuthAT-2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001172 |
|---|---|
| TE superfamily | Activator |
| TE class | DNA |
| Species | Eutheria |
| Length | 2747 |
| Kimura value | 25.50 |
| Tau index | 1.0000 |
| Description | Ancient hAT DNA transposon from eutherian mammals. |
| Comment | >74% identical to consensus. It encodes remnants of transposase. No copies in opossum. ORF 727-2562 encoded a transposase closest related to HAT-12_XT_tp of Xenopus and HAT5_CI_tp and HAT1_CI_tp of Ciona. Present at orthologous sites throughout Eutheria, but not in marsupials. |
| Sequence |
TAGGGATGCACCGAAGTTCGGCTTCGGCCTCGGTATTCGGCCAAAATCTGCTATTCGGCTTCGGCTTCGGCCTCGGCCTTGGAAGGCCGAATAGCCGAATGCCTACTTCAACGTCATTTCTGGCATCCCTGAACTTGTGCGTGATCAATGATCGTGTGATCGCGTAGGTTACCATCATATCTAATCAGCGTAACAACGTCAGTAATACGAACAAGGCATGTCATTCGGATTTATTGTTAATATCTGAATATTCACTTTCAAATATAGGTAAGCATTCTAGATGTAACTTGGAGTGAAAAATCTCCTTATGTGCTTTATATGTTGAAATTCTATCAGTCAGTTGAAGTATAAATGTATATTTATTATTGCAAGAGTAAAATGCTGCAATAATTAATGATGATTGTGAAAGCTGTTAATTTTATGTACAAAAACAATTATTAAGAACTTTCAAATAGTTAAATAAATAGGGAAATAGATTGACAGTTAATACGAATATTAAGAGAGAGTGCGTTAGCTAGATAACTTTAGGAAGAACATTATATCCTTTTTGAGCCAACAAATGTTTATAAAAATTTAAATAATAATACAAGGCAGAATAATAGAGATTAGATTATATCATAATTCTAATCTTTGTAGAATTGTTTGGTGTACTAGCATTCATAACATTAAACAAAATAACCTTTAAGAACTGTATTTAATTTTTAGTTATTTAATTCCATTTAGGCCATGAGTCTTTCAAGAAAAAGTCCTATTTGGGAATTCTTCACATCTTGTGAGGATGAATTAAAAGCAGAATGTCAACTTTGCCACCTCAAAATTTCACGAGGAGGAAAAACTCCAAAATCATGTACAACAACATCCATGATAAATCATCTTCGATCCAGACATAATAAAGAATATAAAGAGTATGAAGAAAAGAAGAAAGTGTTAGAGAAAAATGAGGTACCCAAAACACATTTTGTTCTCACTAATCAAACTTCAAAACAACAGACTTTACAAGAATGCTTTAAGAAGACAATTCCTTATAGTTTTGAGTCTATGGAGGCTAAAAATTTAAACAAAAAGCTTGTCGAAATGATTGCTATAGACTGCCAACCATTTTCAGTAGTTGAAGACGAAGGATTTTTGAGATTTGCCCAAGCTATGAATCCTAGGTACAAAGTTCCTTCTAGAAAACATGTTACTGAAAAACTTTTTCCTGAATTATATTCTGCTGTGCACAAAAAGGTTAGTGATATTATTAAATGTGCTACTTCTGTATCTTGTACATCAGACATTTGGACATGCAGAAACAACCAGAAGTCTTTTTTAAGTTTGACAGCACGGTGGATTAATGATGAATTCAACTATGCTTCTGCTTTACTTGCTTGCCGAGAGATTTCTGGGTCTCACACAGCTAACAACACAGTGAATCTGACTGAAGAAATATTTATAGAATGGAAAATCAGTAAAGAAAAGTGTCATGCAATTGTCATTGACAATGGAACAAACATGGTGAAGGCTATGAGTGATTTAGGAATCACAAGCATACGATGTTTTGTTCACACCCTTCAGTTGTGTGTTCAGAAAGTAATTATAGCACAGCGTAATGTAACAGAATTACTGGCCGTAAGCAGAAAGATAGTGGGCCACTTTCATCATTCTTCTTCAGCCAAAGACAAACTACATGACATACAAGAGATTTTGGAACTGCCTTGTCATGTACTTATACAAGATGTTCAAACAAGATGGAATAGCAGCTATTACATGTTAAAAAGGCTGCTTGAACAAAAGAAAGCCTTAATACTGTACTTTGCAGATAACAATACCAACATAGCAGGACTTACTAACAACCAATGGTTGCTTGCAGAGAAAGTAGTTCGTTTGCTGGAACCTGCTGAAGAAGTAACCAAACTGATGTGCCTTGAGAGTGCAAGTATTTCTTACATGATACCTGCTGTAAAGATCCTCCTATCATTCTACTCCAGGGAAGATGCTGAAATTGGTGTGCATGCAATGAAAGCTGAGATGCAGATGGAAATTCAGAGACGATTTTGTTATCTTGAAAGCCAATTACATTGCTCCATTGCCACATTTCTAGATCCAAGGTTTAAGGACAAATTTTTCTCAAGTGATTGTGTGAAGCAGCAAGTGCATGCAAAAATATTAGAAATAAAANATATAAGTGAGGGCAACAATCTTAAGTCTGCTTCTGAAAATATTCAGAAAGCATCTTCTTCAAGCAGTGCGCAAAGCTTCAGTTTGTGGGATTGCTTCAATGAAATTGCATCATCACCATCGACCAAATCTTCAAGTCCAGGAGTTGAAGAGGAGATAAGTCTTTACCTTAGTCGGTTACTATTAGAGAGGAAGGAAAGCTTAATAACTTGGTGGCAACATCACCATCAGCAGTACCCTATACTGGCAGAGCTAGCCAAAAAATATCTTGCTCCTCCACCGACCTCAGTTGAAAGTGAGCGTCTATTTAGTATCGCAAATGTGCAGTATAGTGACCGCAGGAGCAATCTAGCAGCTGACAGTGCTGAGAAATTATTGTTCCTGCACTATAATGTCAAACTTTAAAATTTGACTACTAAAATTTTTAATAATAAAATTGTAATAATAATTAANTTTTGANATAAATTTCAGATTTATTCTTGTATCCCAGAAGTTCATTCTATGATGGTGATATTCGGCTTCGGCCGAATATTGATTTTAACACTCGGCCATTCGGCATTCGGCCAAAATGTGTATTCGGTGCACCTCTA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| EuthAT-2 | EWSR1-FLI1 | 909 | 926 | + | -12.61 | TGAAGAAAAGAAGAAAGT |
| EuthAT-2 | ZSCAN16 | 1532 | 1549 | - | -21.13 | GGGTGTGAACAAAACATC |
| EuthAT-2 | BPC5 | 454 | 483 | + | -29.71 | AGTTAAATAAATAGGGAAATAGATTGACAG |
| EuthAT-2 | BPC5 | 910 | 939 | + | -33.78 | GAAGAAAAGAAGAAAGTGTTAGAGAAAAAT |
| EuthAT-2 | BPC5 | 458 | 487 | + | -41.32 | AAATAAATAGGGAAATAGATTGACAGTTAA |
| EuthAT-2 | BPC5 | 493 | 522 | + | -42.34 | ATATTAAGAGAGAGTGCGTTAGCTAGATAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
