EuthAT-2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001172 |
|---|---|
| TE superfamily | Activator |
| TE class | DNA |
| Species | Eutheria |
| Length | 2747 |
| Kimura value | 25.50 |
| Tau index | 1.0000 |
| Description | Ancient hAT DNA transposon from eutherian mammals. |
| Comment | >74% identical to consensus. It encodes remnants of transposase. No copies in opossum. ORF 727-2562 encoded a transposase closest related to HAT-12_XT_tp of Xenopus and HAT5_CI_tp and HAT1_CI_tp of Ciona. Present at orthologous sites throughout Eutheria, but not in marsupials. |
| Sequence |
TAGGGATGCACCGAAGTTCGGCTTCGGCCTCGGTATTCGGCCAAAATCTGCTATTCGGCTTCGGCTTCGGCCTCGGCCTTGGAAGGCCGAATAGCCGAATGCCTACTTCAACGTCATTTCTGGCATCCCTGAACTTGTGCGTGATCAATGATCGTGTGATCGCGTAGGTTACCATCATATCTAATCAGCGTAACAACGTCAGTAATACGAACAAGGCATGTCATTCGGATTTATTGTTAATATCTGAATATTCACTTTCAAATATAGGTAAGCATTCTAGATGTAACTTGGAGTGAAAAATCTCCTTATGTGCTTTATATGTTGAAATTCTATCAGTCAGTTGAAGTATAAATGTATATTTATTATTGCAAGAGTAAAATGCTGCAATAATTAATGATGATTGTGAAAGCTGTTAATTTTATGTACAAAAACAATTATTAAGAACTTTCAAATAGTTAAATAAATAGGGAAATAGATTGACAGTTAATACGAATATTAAGAGAGAGTGCGTTAGCTAGATAACTTTAGGAAGAACATTATATCCTTTTTGAGCCAACAAATGTTTATAAAAATTTAAATAATAATACAAGGCAGAATAATAGAGATTAGATTATATCATAATTCTAATCTTTGTAGAATTGTTTGGTGTACTAGCATTCATAACATTAAACAAAATAACCTTTAAGAACTGTATTTAATTTTTAGTTATTTAATTCCATTTAGGCCATGAGTCTTTCAAGAAAAAGTCCTATTTGGGAATTCTTCACATCTTGTGAGGATGAATTAAAAGCAGAATGTCAACTTTGCCACCTCAAAATTTCACGAGGAGGAAAAACTCCAAAATCATGTACAACAACATCCATGATAAATCATCTTCGATCCAGACATAATAAAGAATATAAAGAGTATGAAGAAAAGAAGAAAGTGTTAGAGAAAAATGAGGTACCCAAAACACATTTTGTTCTCACTAATCAAACTTCAAAACAACAGACTTTACAAGAATGCTTTAAGAAGACAATTCCTTATAGTTTTGAGTCTATGGAGGCTAAAAATTTAAACAAAAAGCTTGTCGAAATGATTGCTATAGACTGCCAACCATTTTCAGTAGTTGAAGACGAAGGATTTTTGAGATTTGCCCAAGCTATGAATCCTAGGTACAAAGTTCCTTCTAGAAAACATGTTACTGAAAAACTTTTTCCTGAATTATATTCTGCTGTGCACAAAAAGGTTAGTGATATTATTAAATGTGCTACTTCTGTATCTTGTACATCAGACATTTGGACATGCAGAAACAACCAGAAGTCTTTTTTAAGTTTGACAGCACGGTGGATTAATGATGAATTCAACTATGCTTCTGCTTTACTTGCTTGCCGAGAGATTTCTGGGTCTCACACAGCTAACAACACAGTGAATCTGACTGAAGAAATATTTATAGAATGGAAAATCAGTAAAGAAAAGTGTCATGCAATTGTCATTGACAATGGAACAAACATGGTGAAGGCTATGAGTGATTTAGGAATCACAAGCATACGATGTTTTGTTCACACCCTTCAGTTGTGTGTTCAGAAAGTAATTATAGCACAGCGTAATGTAACAGAATTACTGGCCGTAAGCAGAAAGATAGTGGGCCACTTTCATCATTCTTCTTCAGCCAAAGACAAACTACATGACATACAAGAGATTTTGGAACTGCCTTGTCATGTACTTATACAAGATGTTCAAACAAGATGGAATAGCAGCTATTACATGTTAAAAAGGCTGCTTGAACAAAAGAAAGCCTTAATACTGTACTTTGCAGATAACAATACCAACATAGCAGGACTTACTAACAACCAATGGTTGCTTGCAGAGAAAGTAGTTCGTTTGCTGGAACCTGCTGAAGAAGTAACCAAACTGATGTGCCTTGAGAGTGCAAGTATTTCTTACATGATACCTGCTGTAAAGATCCTCCTATCATTCTACTCCAGGGAAGATGCTGAAATTGGTGTGCATGCAATGAAAGCTGAGATGCAGATGGAAATTCAGAGACGATTTTGTTATCTTGAAAGCCAATTACATTGCTCCATTGCCACATTTCTAGATCCAAGGTTTAAGGACAAATTTTTCTCAAGTGATTGTGTGAAGCAGCAAGTGCATGCAAAAATATTAGAAATAAAANATATAAGTGAGGGCAACAATCTTAAGTCTGCTTCTGAAAATATTCAGAAAGCATCTTCTTCAAGCAGTGCGCAAAGCTTCAGTTTGTGGGATTGCTTCAATGAAATTGCATCATCACCATCGACCAAATCTTCAAGTCCAGGAGTTGAAGAGGAGATAAGTCTTTACCTTAGTCGGTTACTATTAGAGAGGAAGGAAAGCTTAATAACTTGGTGGCAACATCACCATCAGCAGTACCCTATACTGGCAGAGCTAGCCAAAAAATATCTTGCTCCTCCACCGACCTCAGTTGAAAGTGAGCGTCTATTTAGTATCGCAAATGTGCAGTATAGTGACCGCAGGAGCAATCTAGCAGCTGACAGTGCTGAGAAATTATTGTTCCTGCACTATAATGTCAAACTTTAAAATTTGACTACTAAAATTTTTAATAATAAAATTGTAATAATAATTAANTTTTGANATAAATTTCAGATTTATTCTTGTATCCCAGAAGTTCATTCTATGATGGTGATATTCGGCTTCGGCCGAATATTGATTTTAACACTCGGCCATTCGGCATTCGGCCAAAATGTGTATTCGGTGCACCTCTA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| EuthAT-2 | SOL1 | 565 | 579 | + | 19.43 | TATAAAAATTTAAAT |
| EuthAT-2 | TCX6 | 565 | 579 | - | 19.37 | ATTTAAATTTTTATA |
| EuthAT-2 | TSO1 | 564 | 578 | + | 19.33 | TTATAAAAATTTAAA |
| EuthAT-2 | ATF4 | 2263 | 2272 | - | 17.50 | ATGATGCAAT |
| EuthAT-2 | CEBPG | 2263 | 2272 | - | 17.31 | ATGATGCAAT |
| EuthAT-2 | GATA1::TAL1 | 1786 | 1802 | - | 16.89 | TTATCTGCAAAGTACAG |
| EuthAT-2 | SoxN | 2050 | 2060 | + | 16.72 | CAATTACATTG |
| EuthAT-2 | TCX2 | 565 | 579 | + | 16.72 | TATAAAAATTTAAAT |
| EuthAT-2 | POU2F1::SOX2 | 571 | 587 | + | 16.63 | AATTTAAATAATAATAC |
| EuthAT-2 | RVE4 | 2418 | 2426 | - | 16.53 | AGATATTTT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
