EuthAT-2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001172 |
|---|---|
| TE superfamily | Activator |
| TE class | DNA |
| Species | Eutheria |
| Length | 2747 |
| Kimura value | 25.50 |
| Tau index | 1.0000 |
| Description | Ancient hAT DNA transposon from eutherian mammals. |
| Comment | >74% identical to consensus. It encodes remnants of transposase. No copies in opossum. ORF 727-2562 encoded a transposase closest related to HAT-12_XT_tp of Xenopus and HAT5_CI_tp and HAT1_CI_tp of Ciona. Present at orthologous sites throughout Eutheria, but not in marsupials. |
| Sequence |
TAGGGATGCACCGAAGTTCGGCTTCGGCCTCGGTATTCGGCCAAAATCTGCTATTCGGCTTCGGCTTCGGCCTCGGCCTTGGAAGGCCGAATAGCCGAATGCCTACTTCAACGTCATTTCTGGCATCCCTGAACTTGTGCGTGATCAATGATCGTGTGATCGCGTAGGTTACCATCATATCTAATCAGCGTAACAACGTCAGTAATACGAACAAGGCATGTCATTCGGATTTATTGTTAATATCTGAATATTCACTTTCAAATATAGGTAAGCATTCTAGATGTAACTTGGAGTGAAAAATCTCCTTATGTGCTTTATATGTTGAAATTCTATCAGTCAGTTGAAGTATAAATGTATATTTATTATTGCAAGAGTAAAATGCTGCAATAATTAATGATGATTGTGAAAGCTGTTAATTTTATGTACAAAAACAATTATTAAGAACTTTCAAATAGTTAAATAAATAGGGAAATAGATTGACAGTTAATACGAATATTAAGAGAGAGTGCGTTAGCTAGATAACTTTAGGAAGAACATTATATCCTTTTTGAGCCAACAAATGTTTATAAAAATTTAAATAATAATACAAGGCAGAATAATAGAGATTAGATTATATCATAATTCTAATCTTTGTAGAATTGTTTGGTGTACTAGCATTCATAACATTAAACAAAATAACCTTTAAGAACTGTATTTAATTTTTAGTTATTTAATTCCATTTAGGCCATGAGTCTTTCAAGAAAAAGTCCTATTTGGGAATTCTTCACATCTTGTGAGGATGAATTAAAAGCAGAATGTCAACTTTGCCACCTCAAAATTTCACGAGGAGGAAAAACTCCAAAATCATGTACAACAACATCCATGATAAATCATCTTCGATCCAGACATAATAAAGAATATAAAGAGTATGAAGAAAAGAAGAAAGTGTTAGAGAAAAATGAGGTACCCAAAACACATTTTGTTCTCACTAATCAAACTTCAAAACAACAGACTTTACAAGAATGCTTTAAGAAGACAATTCCTTATAGTTTTGAGTCTATGGAGGCTAAAAATTTAAACAAAAAGCTTGTCGAAATGATTGCTATAGACTGCCAACCATTTTCAGTAGTTGAAGACGAAGGATTTTTGAGATTTGCCCAAGCTATGAATCCTAGGTACAAAGTTCCTTCTAGAAAACATGTTACTGAAAAACTTTTTCCTGAATTATATTCTGCTGTGCACAAAAAGGTTAGTGATATTATTAAATGTGCTACTTCTGTATCTTGTACATCAGACATTTGGACATGCAGAAACAACCAGAAGTCTTTTTTAAGTTTGACAGCACGGTGGATTAATGATGAATTCAACTATGCTTCTGCTTTACTTGCTTGCCGAGAGATTTCTGGGTCTCACACAGCTAACAACACAGTGAATCTGACTGAAGAAATATTTATAGAATGGAAAATCAGTAAAGAAAAGTGTCATGCAATTGTCATTGACAATGGAACAAACATGGTGAAGGCTATGAGTGATTTAGGAATCACAAGCATACGATGTTTTGTTCACACCCTTCAGTTGTGTGTTCAGAAAGTAATTATAGCACAGCGTAATGTAACAGAATTACTGGCCGTAAGCAGAAAGATAGTGGGCCACTTTCATCATTCTTCTTCAGCCAAAGACAAACTACATGACATACAAGAGATTTTGGAACTGCCTTGTCATGTACTTATACAAGATGTTCAAACAAGATGGAATAGCAGCTATTACATGTTAAAAAGGCTGCTTGAACAAAAGAAAGCCTTAATACTGTACTTTGCAGATAACAATACCAACATAGCAGGACTTACTAACAACCAATGGTTGCTTGCAGAGAAAGTAGTTCGTTTGCTGGAACCTGCTGAAGAAGTAACCAAACTGATGTGCCTTGAGAGTGCAAGTATTTCTTACATGATACCTGCTGTAAAGATCCTCCTATCATTCTACTCCAGGGAAGATGCTGAAATTGGTGTGCATGCAATGAAAGCTGAGATGCAGATGGAAATTCAGAGACGATTTTGTTATCTTGAAAGCCAATTACATTGCTCCATTGCCACATTTCTAGATCCAAGGTTTAAGGACAAATTTTTCTCAAGTGATTGTGTGAAGCAGCAAGTGCATGCAAAAATATTAGAAATAAAANATATAAGTGAGGGCAACAATCTTAAGTCTGCTTCTGAAAATATTCAGAAAGCATCTTCTTCAAGCAGTGCGCAAAGCTTCAGTTTGTGGGATTGCTTCAATGAAATTGCATCATCACCATCGACCAAATCTTCAAGTCCAGGAGTTGAAGAGGAGATAAGTCTTTACCTTAGTCGGTTACTATTAGAGAGGAAGGAAAGCTTAATAACTTGGTGGCAACATCACCATCAGCAGTACCCTATACTGGCAGAGCTAGCCAAAAAATATCTTGCTCCTCCACCGACCTCAGTTGAAAGTGAGCGTCTATTTAGTATCGCAAATGTGCAGTATAGTGACCGCAGGAGCAATCTAGCAGCTGACAGTGCTGAGAAATTATTGTTCCTGCACTATAATGTCAAACTTTAAAATTTGACTACTAAAATTTTTAATAATAAAATTGTAATAATAATTAANTTTTGANATAAATTTCAGATTTATTCTTGTATCCCAGAAGTTCATTCTATGATGGTGATATTCGGCTTCGGCCGAATATTGATTTTAACACTCGGCCATTCGGCATTCGGCCAAAATGTGTATTCGGTGCACCTCTA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| EuthAT-2 | RVE7 | 2418 | 2426 | + | 16.38 | AAAATATCT |
| EuthAT-2 | RVE6 | 2418 | 2426 | - | 16.23 | AGATATTTT |
| EuthAT-2 | RVE5 | 2418 | 2426 | - | 16.21 | AGATATTTT |
| EuthAT-2 | RVE8 | 2418 | 2426 | - | 16.08 | AGATATTTT |
| EuthAT-2 | atfs-1 | 2263 | 2272 | - | 15.96 | ATGATGCAAT |
| EuthAT-2 | MCM1 | 748 | 759 | + | 15.92 | CCTATTTGGGAA |
| EuthAT-2 | DREB2D | 2428 | 2441 | + | 15.89 | GCTCCTCCACCGAC |
| EuthAT-2 | LHY | 2418 | 2426 | - | 15.86 | AGATATTTT |
| EuthAT-2 | REV | 389 | 402 | - | 15.74 | AATCATCATTAATT |
| EuthAT-2 | Zfx | 70 | 79 | + | 15.70 | GCCTCGGCCT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
