Eulor9C
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000141 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 270 |
| Kimura value | 25.08 |
| Tau index | 0.0000 |
| Description | Eulor9C (Euteleostomi-conserved low frequency repeat 9C) |
| Comment | Putative DNA transposon (assignment unclear). Present in mammals and birds (>100 copies). Entirety of Eulor9C forms one long, imperfect hairpin. |
| Sequence |
TATGAATATTAAATACAAAAAACCGCGTTNAAATAACGTTAAGGGTCTGACTTAAACCCACAAAAGCNAGGAAATTCAGAGTTAAGGCTGACACTCCGTCCTTAACTCACCCCGTCGTGCCTGGGTATCTNTTNATTTTCTTTNNNATAGGCACAACGGCGTGAGTTAAGGACGGAGTGTCAGCCTTAACTTTGAATTTCCTGGCTTTTGTCGGTTTGTGTCACAACCTTAACGTTATTTAAACGTAGTTTTTTGTATTTAATATTCATA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor9C | ZNF324 | 164 | 177 | + | 9.03 | AGTTAAGGACGGAG |
| Eulor9C | ZNF324 | 94 | 107 | - | 9.03 | AGTTAAGGACGGAG |
| Eulor9C | RREB1 | 203 | 221 | - | 8.96 | ACACAAACCGACAAAAGCC |
| Eulor9C | ERF043 | 209 | 217 | - | 8.35 | AAACCGACA |
| Eulor9C | ZNF558 | 188 | 216 | - | 1.62 | AACCGACAAAAGCCAGGAAATTCAAAGTT |
| Eulor9C | ZSCAN4 | 208 | 222 | - | 1.24 | GACACAAACCGACAA |
| Eulor9C | TRP2 | 246 | 266 | - | -1.17 | AATATTAAATACAAAAAACTA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
