Eulor9C
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000141 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 270 |
| Kimura value | 25.08 |
| Tau index | 0.0000 |
| Description | Eulor9C (Euteleostomi-conserved low frequency repeat 9C) |
| Comment | Putative DNA transposon (assignment unclear). Present in mammals and birds (>100 copies). Entirety of Eulor9C forms one long, imperfect hairpin. |
| Sequence |
TATGAATATTAAATACAAAAAACCGCGTTNAAATAACGTTAAGGGTCTGACTTAAACCCACAAAAGCNAGGAAATTCAGAGTTAAGGCTGACACTCCGTCCTTAACTCACCCCGTCGTGCCTGGGTATCTNTTNATTTTCTTTNNNATAGGCACAACGGCGTGAGTTAAGGACGGAGTGTCAGCCTTAACTTTGAATTTCCTGGCTTTTGTCGGTTTGTGTCACAACCTTAACGTTATTTAAACGTAGTTTTTTGTATTTAATATTCATA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor9C | IDD6 | 205 | 220 | + | 19.23 | CTTTTGTCGGTTTGTG |
| Eulor9C | IDD6 | 205 | 220 | + | 19.18 | CTTTTGTCGGTTTGTG |
| Eulor9C | IDD5 | 206 | 219 | + | 18.99 | TTTTGTCGGTTTGT |
| Eulor9C | IDD7 | 206 | 219 | - | 18.79 | ACAAACCGACAAAA |
| Eulor9C | GAF1 | 206 | 220 | - | 18.32 | CACAAACCGACAAAA |
| Eulor9C | IDD4 | 205 | 219 | - | 18.30 | ACAAACCGACAAAAG |
| Eulor9C | JKD | 206 | 217 | + | 16.92 | TTTTGTCGGTTT |
| Eulor9C | NUC | 206 | 217 | + | 16.65 | TTTTGTCGGTTT |
| Eulor9C | IDD1 | 206 | 217 | + | 16.36 | TTTTGTCGGTTT |
| Eulor9C | IDD11 | 206 | 217 | - | 16.03 | AAACCGACAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
