Eulor9C
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000141 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 270 |
| Kimura value | 25.08 |
| Tau index | 0.0000 |
| Description | Eulor9C (Euteleostomi-conserved low frequency repeat 9C) |
| Comment | Putative DNA transposon (assignment unclear). Present in mammals and birds (>100 copies). Entirety of Eulor9C forms one long, imperfect hairpin. |
| Sequence |
TATGAATATTAAATACAAAAAACCGCGTTNAAATAACGTTAAGGGTCTGACTTAAACCCACAAAAGCNAGGAAATTCAGAGTTAAGGCTGACACTCCGTCCTTAACTCACCCCGTCGTGCCTGGGTATCTNTTNATTTTCTTTNNNATAGGCACAACGGCGTGAGTTAAGGACGGAGTGTCAGCCTTAACTTTGAATTTCCTGGCTTTTGTCGGTTTGTGTCACAACCTTAACGTTATTTAAACGTAGTTTTTTGTATTTAATATTCATA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor9C | CAMTA1 | 21 | 29 | + | 13.06 | AACCGCGTT |
| Eulor9C | GLYMA-07G038400 | 177 | 183 | - | 12.89 | CTGACAC |
| Eulor9C | GLYMA-07G038400 | 88 | 94 | + | 12.89 | CTGACAC |
| Eulor9C | AT1G76870 | 19 | 26 | + | 12.71 | AAAACCGC |
| Eulor9C | RAP2-10 | 209 | 215 | - | 12.69 | ACCGACA |
| Eulor9C | POU4F3 | 257 | 268 | - | 12.68 | TGAATATTAAAT |
| Eulor9C | POU4F3 | 3 | 14 | + | 12.68 | TGAATATTAAAT |
| Eulor9C | POU4F1 | 257 | 268 | - | 12.51 | TGAATATTAAAT |
| Eulor9C | POU4F1 | 3 | 14 | + | 12.51 | TGAATATTAAAT |
| Eulor9C | ERF039 | 209 | 215 | - | 12.43 | ACCGACA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
