Eulor9C
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000141 |
|---|---|
| TE superfamily | Transposase |
| TE order | DNA |
| Species | Amniota |
| Length | 270 |
| Kimura value | 25.08 |
| Tau index | 0.0000 |
| Description | Eulor9C (Euteleostomi-conserved low frequency repeat 9C) |
| Comment | Putative DNA transposon (assignment unclear). Present in mammals and birds (>100 copies). Entirety of Eulor9C forms one long, imperfect hairpin. |
| Sequence |
TATGAATATTAAATACAAAAAACCGCGTTNAAATAACGTTAAGGGTCTGACTTAAACCCACAAAAGCNAGGAAATTCAGAGTTAAGGCTGACACTCCGTCCTTAACTCACCCCGTCGTGCCTGGGTATCTNTTNATTTTCTTTNNNATAGGCACAACGGCGTGAGTTAAGGACGGAGTGTCAGCCTTAACTTTGAATTTCCTGGCTTTTGTCGGTTTGTGTCACAACCTTAACGTTATTTAAACGTAGTTTTTTGTATTTAATATTCATA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor9C | MGP | 205 | 217 | - | 15.09 | AAACCGACAAAAG |
| Eulor9C | lin-54 | 189 | 201 | - | 14.96 | GGAAATTCAAAGT |
| Eulor9C | ARF18 | 207 | 214 | - | 14.63 | CCGACAAA |
| Eulor9C | TCX3 | 188 | 199 | - | 13.77 | AAATTCAAAGTT |
| Eulor9C | Zm00001d027846 | 136 | 143 | - | 13.75 | AAAGAAAA |
| Eulor9C | ARF1 | 209 | 215 | - | 13.49 | ACCGACA |
| Eulor9C | D1 | 235 | 242 | - | 13.38 | TTAAATAA |
| Eulor9C | ZNF213 | 115 | 126 | - | 13.21 | ACCCAGGCACGA |
| Eulor9C | CUP9 | 215 | 223 | - | 13.15 | TGACACAAA |
| Eulor9C | PHYPADRAFT_173530 | 209 | 216 | + | 13.10 | TGTCGGTT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
